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2024
Ahrens MB.  2024.  Closing the Experiment-Modeling-Perturbation Loop in Whole-Brain Neuroscience.. Neurosci Bull.
Jradi FM, English BP, Brown TA, Aaron J, Khuon S, Galbraith JA, Galbraith CG, Lavis LD.  2024.  Coumarin as a general switching auxiliary to prepare photochromic and spontaneously blinking fluorophores. bioRxiv.
Patton W, Rhoades JL, Zouinkhi M, Ackerman DG, Malin-Mayor C, Adjavon D, Heinrich L, Bennett D, Zubov Y, Team CMProject et al..  2024.  DaCapo: a modular deep learning framework for scalable 3D image segmentation. arXiv.
Patton W, Rhoades JL, Zouinkhi M, Ackerman DG, Malin-Mayor C, Adjavon D, Heinrich L, Bennett D, Zubov Y, Team CMProject et al..  2024.  DaCapo: a modular deep learning framework for scalable 3D image segmentation. arXiv.
Ackerman D, Avetissian E, Bleck CKE, Bogovic JA, Innerberger M, Korff W, Li W-P, Lu Z, Petruncio A, Preibisch S et al..  2024.  Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning. bioRxiv.
Ackerman D, Avetissian E, Bleck CKE, Bogovic JA, Innerberger M, Korff W, Li W-P, Lu Z, Petruncio A, Preibisch S et al..  2024.  Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning. bioRxiv.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2024.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol.
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Bailly R, Malfante M, Allier C, Paviolo C, Ghenim L, Padmanabhan K, Bardin S, Mars J.  2024.  Detecting abnormal cell behaviors from dry mass time series. Scientific Reports. 14(1)
Vickers P, Adamo L, Alfano M, Clark C, Cresto E, Cui H, Dang H, Dellsén F, Dupin N, Gradowski L et al..  2024.  Development of a novel methodology for ascertaining scientific opinion and extent of agreement.. PLoS One. 19(12):e0313541.
Vickers P, Adamo L, Alfano M, Clark C, Cresto E, Cui H, Dang H, Dellsén F, Dupin N, Gradowski L et al..  2024.  Development of a novel methodology for ascertaining scientific opinion and extent of agreement.. PLoS One. 19(12):e0313541.
Patel A, Gonzalez V, Menon T, Shvartsman SY, Burdine R, Avdeeva M.  2024.  Disrupted developmental signaling induces novel transcriptional states. bioRxiv.
Zhong L, Baptista S, Gattoni R, Arnold J, Flickinger D, Stringer C, Pachitariu M.  2024.  Distinct streams for supervised and unsupervised learning in the visual cortex. bioRxiv.
Chou HTing, Valencia F, Alexander JC, Bell ADavis, Deb D, Pollard DA, Paaby AB.  2024.  Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains.. Genetics. 226(1)
Huang Y-C, Chen H-C, Lin Y-T, Lin S-T, Zheng Q, Abdelfattah AS, Lavis LD, Schreiter ER, Lin B-J, Chen T-W.  2024.  Dynamic assemblies of parvalbumin interneurons in brain oscillations.. Neuron.
Davidsen K, Marvin JS, Aggarwal A, Brown TA, Sullivan LB.  2024.  An engineered biosensor enables dynamic aspartate measurements in living cells.. Elife. 12
Ryvkin J, Omesi L, Kim Y-K, Levi M, Pozeilov H, Barak-Buchris L, Agranovich B, Abramovich I, Gottlieb E, Jacob A et al..  2024.  Failure to mate enhances investment in behaviors that may promote mating reward and impairs the ability to cope with stressors via a subpopulation of Neuropeptide F receptor neurons.. PLoS Genetics. 20(1):e1011054.
Ryvkin J, Omesi L, Kim Y-K, Levi M, Pozeilov H, Barak-Buchris L, Agranovich B, Abramovich I, Gottlieb E, Jacob A et al..  2024.  Failure to mate enhances investment in behaviors that may promote mating reward and impairs the ability to cope with stressors via a subpopulation of Neuropeptide F receptor neurons.. PLoS Genetics. 20(1):e1011054.
Wang H, Nikain C, Fortounas KI, Amengual J, Tufanli O, La Forest M, Yu Y, Wang MC, Watts R, Lehner R et al..  2024.  FITM2 deficiency results in ER lipid accumulation, ER stress, and reduced apolipoprotein B lipidation and VLDL triglyceride secretion in vitro and in mouse liver.. Mol Metab. :102048.
Kumari R, Ven K, Chastney M, Kokate SB, Peränen J, Aaron J, Kogan K, Almeida-Souza L, Kremneva E, Poincloux R et al..  2024.  Focal adhesions contain three specialized actin nanoscale layers. Nature Communications. 15(1)
Kumari R, Ven K, Chastney M, Kokate SB, Peränen J, Aaron J, Kogan K, Almeida-Souza L, Kremneva E, Poincloux R et al..  2024.  Focal adhesions contain three specialized actin nanoscale layers. Nature Communications. 15(1)
Sinclair R, Wang M, Jawaid MZaki, Longkumer T, Aaron J, Rossetti B, Wait E, McDonald K, Cox D, Heddleston J et al..  2024.  Four-dimensional quantitative analysis of cell plate development using lattice light sheet microscopy identifies robust transition points between growth phases.. Journal of Experimental Botany.
Sinclair R, Wang M, Jawaid MZaki, Longkumer T, Aaron J, Rossetti B, Wait E, McDonald K, Cox D, Heddleston J et al..  2024.  Four-dimensional quantitative analysis of cell plate development in Arabidopsis using lattice light sheet microscopy identifies robust transition points between growth phases. J Exp Bot. 75(10):2829-2847.
Bhattacharya S, Ettela A, Haydak J, Hobson CM, Stern A, Yoo M, Chew T-L, G Gusella L, Gallagher EJ, Hone JC et al..  2024.  A high-throughput microfabricated platform for rapid quantification of metastatic potential.. Sci Adv. 10(33):eadk0015.
Boffi NM, Guo Y, Rycroft CH, Amir A.  2024.  How microscopic epistasis and clonal interference shape the fitness trajectory in a spin glass model of microbial long-term evolution. eLife.