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2017
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.  2017.  TED: A Tolerant Edit Distance for segmentation evaluation.. Methods. 115:119-27.
Wang S, Tang NHeok, Lara-Gonzalez P, Zhao Z, Cheerambathur DK, Prevo B, Chisholm AD, Desai A, Oegema K.  2017.  A toolkit for GFP-mediated tissue-specific protein degradation in C. elegans. Development. 144:2694-2701.
Wang S, Tang NHeok, Lara-Gonzalez P, Zhao Z, Cheerambathur DK, Prevo B, Chisholm AD, Desai A, Oegema K.  2017.  A toolkit for GFP-mediated tissue-specific protein degradation in C. elegans. Development. 144:2694-2701.
Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, H Seung S.  2017.  Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.. Bioinformatics (Oxford, England). 33(15):2424-6.
Klapoetke NC, Nern A, Peek MY, Rogers EM, Breads P, Rubin GM, Reiser MB, Card GM.  2017.  Ultra-selective looming detection from radial motion opponency.. Nature. 551(7679):237-241.
Jiang Z, Luo H-Y, Farrell JJ, Zhang Z, Schulz VP, Albarawi D, Steinberg MH, Al-Allawi NAS, Gallagher PG, Forget BG et al..  2017.  A variant Sp1 (R218Q) transcription factor might enhance HbF expression in β(0) -thalassaemia homozygotes.. British Journal of Haematology. 180(5):755-7.
Cai E, Marchuk K, Beemiller P, Beppler C, Rubashkin MG, Weaver VM, Gérard A, Liu T-L, Chen B-C, Betzig E et al..  2017.  Visualizing dynamic microvillar search and stabilization during ligand detection by T cells.. Science (New York, N.Y.). 356(6338)
Cai E, Marchuk K, Beemiller P, Beppler C, Rubashkin MG, Weaver VM, Gérard A, Liu T-L, Chen B-C, Betzig E et al..  2017.  Visualizing dynamic microvillar search and stabilization during ligand detection by T cells.. Science (New York, N.Y.). 356(6338)
Cui M, Kong L.  2017.  Volume imaging.. USPTO. B2
Song A, Charles AS, Koay SAnn, Gauthier JL, Thiberge SY, Pillow JW, Tank DW.  2017.  Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nature Methods. 14(4):420-426.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Han X, Li P, Yang Z, Huang X, Wei G, Sun Y, Kang X, Hu X, Deng Q, Chen L et al..  2017.  Zyxin regulates endothelial von Willebrand factor secretion by reorganizing actin filaments around exocytic granules.. Nature Communications. 8:14639.
2016
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS.  2016.  Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.. Proceedings of the National Academy of Sciences of the United States of America. 113(40):11232-6.
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS.  2016.  Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.. Proceedings of the National Academy of Sciences of the United States of America. 113(40):11232-6.
Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP et al..  2016.  Accurate design of megadalton-scale two-component icosahedral protein complexes.. Science (New York, N.Y.). 353(6297):389-94.
Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ.  2016.  Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.. Nature Biotechnology. 34(12):1267-78.
Royer LA, Lemon WC, Chhetri RK, Wan Y, Coleman M, Myers EW, Keller PJ.  2016.  Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms.. Nature Biotechnology. 34(12):1267-78.
MacNamee SE, Liu KE, Gerhard S, Tran CT, Fetter RD, Cardona A, Tolbert LP, Oland LA.  2016.  Astrocytic glutamate transport regulates a Drosophila CNS synapse that lacks astrocyte ensheathment.. The Journal of Comparative Neurology. 524(10):1979-98.
Chu J, Oh Y, Sens A, Ataie N, Dana H, Macklin JJ, Laviv T, Welf ES, Dean KM, Zhang F et al..  2016.  A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.. Nature Biotechnology. 34(7):760-7.
Lavis LD, Grimm JB, English BP, Choi H, Muthusamy AK, Mehl BP, Dong P, Brown TA, Lippincott-Schwartz J, Liu Z et al..  2016.  Bright photoactivatable fluorophores for single-molecule imaging.. Nature Methods. 13(12):985-8.
Wan Y, Almeida AD, Rulands S, Chalour N, Muresan L, Wu Y, Simons BD, He J, Harris WA.  2016.  The ciliary marginal zone of the zebrafish retina: clonal and time-lapse analysis of a continuously growing tissue.. Development (Cambridge, England). 143(7):1099-107.
Fushiki A, Zwart MF, Kohsaka H, Fetter RD, Cardona A, Nose A.  2016.  A circuit mechanism for the propagation of waves of muscle contraction in Drosophila.. eLife. 5
Shi D, Nannenga BL, M de la Cruz J, Liu J, Sawtelle S, Calero G, Reyes FE, Hattne J, Gonen T.  2016.  The collection of MicroED data for macromolecular crystallography.. Nature Protocols. 11(5):895-904.