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2019
Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S.  2019.  An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability.. Nature Communications. 10(1):216.
Chang C-L, Weigel AV, Ioannou MS, H Pasolli A, C Xu S, Peale DR, Shtengel G, Freeman M, Hess HF, Blackstone C et al..  2019.  Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III.. Journal of Cell Biology. 218(8):2583-99.
Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C et al..  2019.  Spatiotemporal constraints on optogenetic inactivation in cortical circuits.. eLife. 8
Stubb A, Guzmán C, Närvä E, Aaron J, Chew T-L, Saari M, Miihkinen M, Jacquemet G, Ivaska J.  2019.  Superresolution architecture of cornerstone focal adhesions in human pluripotent stem cells.. Nature Communications. 10(1):4756.
2018
Otsuna H, Ito M, Kawase T.  2018.  Color depth MIP mask search: a new tool to expedite Split-GAL4 creation.. bioRxiv.
Kunduri G, Turner-Evans D, Konya Y, Izumi Y, Nagashima K, Lockett S, Holthuis J, Bamba T, Acharya U, Acharya JK.  2018.  Defective cortex glia plasma membrane structure underlies light-induced epilepsy in mutants.. Proceedings of the National Academy of Sciences of the United States of America. 115(38):E8919-28.
Paez-Segala MG, Wang Y, Iyer N, Li W-P, Rivlin PK, Looger LL.  2018.  Development and Applications of Fluorescent Proteins for Correlative Light and Electron Microscopy. Microscopy and Microanalysis. 24(S1):2318-2319.
Inagaki HK, Inagaki M, Romani S, Svoboda K.  2018.  Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(17):4163-85.
Inagaki HK, Inagaki M, Romani S, Svoboda K.  2018.  Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(17):4163-85.
Condon ND, Heddleston JM, Chew T-L, Luo L, McPherson PS, Ioannou MS, Hodgson L, Stow JL, Wall AA.  2018.  Macropinosome formation by tent pole ruffling in macrophages.. The Journal of Cell Biology. 217(11):3873-85.
Taylor AB, Ioannou MS, Aaron J, Chew T-L.  2018.  Model-free quantification and visualization of colocalization in fluorescence images.. Cytometry. Part A : the journal of the International Society for Analytical Cytology.
Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow P-M, Zietz M, Hoffman MM et al..  2018.  Opportunities and obstacles for deep learning in biology and medicine.. Journal of The Royal Society Interface.
Stubb A, Guzmán C, Närvä E, Aaron J, Chew T-L, Saari M, Miihkinen M, Jacquemet G, Ivaska J.  2018.  Superresolution architecture of pluripotency guarding adhesions.. bioRxiv.
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner GW, Nern A, Colonell J, Malkesman O, Saalfeld S.  2018.  An unbiased template of the Drosophila brain and ventral nerve cord.. bioRxiv.
Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M et al..  2018.  Visual physiology of the layer 4 cortical circuit in silico.. PLoS Computational Biology. 14(11):e1006535.
2017
Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin, ii A, Jones ML et al..  2017.  Building bridges between cellular and molecular structural biology.. eLife. 6
Isaacson MD, Hedwig B.  2017.  Electrophoresis of polar fluorescent tracers through the nerve sheath labels neuronal populations for anatomical and functional imaging.. Scientific Reports. 7:40433.
Yang C-P, Samuels TJ, Huang Y, Yang L, Ish-Horowicz D, Davis I, Lee T.  2017.  Imp and Syp RNA-binding proteins govern decommissioning of Drosophila neural stem cells.. Development (Cambridge, England). 144(19):3454-64.
Guo ZV, Inagaki HK, Daie K, Druckmann S, Gerfen CR, Svoboda K.  2017.  Maintenance of persistent activity in a frontal thalamocortical loop.. Nature. 545(7653):181-6.
Stefan CJ, Trimble WS, Grinstein S, Drin G, Reinisch K, De Camilli P, Cohen S, Valm AM, Lippincott-Schwartz J, Levine TP et al..  2017.  Membrane dynamics and organelle biogenesis-lipid pipelines and vesicular carriers.. BMC Biology. 15(1):102.
Taylor AB, Ioannou MS, Watanabe T, Hahn K, Chew T-L.  2017.  Perceptually accurate display of two greyscale images as a single colour image.. Journal of Microscopy.
Hart C, Abuladel N, Bee M, Kreider MC, CVitan AC, Esson MM, Farag A, Ibeh T, Kalivas EN, Larco D-M et al..  2017.  Protein-templated gold nanoparticle synthesis: protein organization, controlled gold sequestration, and unexpected reaction products.. Dalton Transactions (Cambridge, England : 2003). 46(47):16465-16473.
Shinomiya K, Ito M.  2017.  Recent progress in the 3D reconstruction of Drosophila neural circuits.. Decoding Neural Circuit Structure and Function. :63-89.
Ren Q, Yang C-P, Liu Z, Sugino K, Mok K, He Y, Ito M, Nern A, Otsuna H, Lee T.  2017.  Stem cell-intrinsic, seven-up-triggered temporal factor gradients diversify intermediate neural progenitors.. Current Biology : CB. 27(9):1303-13.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Stochastic protein labeling enables long-term single molecule observation in vivo.. bioRxiv.