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2022
Sheban D, Shani T, Maor R, Aguilera-Castrejon A, Mor N, Oldak B, Shmueli MD, Eisenberg-Lerner A, Bayerl J, Hebert J et al..  2022.  SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity. Molecular Cell. 82:106-122.e9.
Fabian J, Siwanowicz I, Uhrhan M, Maeda M, Bomphrey RJ, Lin H-T.  2022.  Systematic characterization of wing mechanosensors that monitor airflow and wing deformations.. iScience. 25(4):104150.
Xie Q, Li J, Li H, Udeshi ND, Svinkina T, Orlin D, Kohani S, Guajardo R, Mani DR, Xu C et al..  2022.  Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code.. Neuron. 110(14):2299-2314.e8.
2021
Lundberg E, Funke J, Uhlmann V, Gerlich D, Walter T, Carpenter A, Coehlo LPedro.  2021.  Which image-based phenotypes are most promising for using AI to understand cellular functions and why? Cell Systems. 12(5):384-387.
2020
Hubbard PM, Berg S, Zhao T, Olbris DJ, Umayam L, Maitin-Shepard J, Januszewski M, Katz WT, Neace ER, Plaza SM.  2020.  Accelerated EM Connectome Reconstruction using 3D Visualization and Segmentation Graphs. bioRxiv.
Li J, Han S, Li H, Udeshi ND, Svinkina T, Mani DR, Xu C, Guajardo R, Xie Q, Li T et al..  2020.  Cell-Surface Proteomic Profiling in the Fly Brain Uncovers Wiring Regulators.. Cell. 180(2):373-386.e15.
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
Unger EK, Keller JP, Altermatt M, Liang R, Matsui A, Dong C, Hon OJ, Yao Z, Sun J, Banala S et al..  2020.  Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.. Cell. 183(7):1986-2002.e26.
Unger EK, Keller JP, Altermatt M, Liang R, Matsui A, Dong C, Hon OJ, Yao Z, Sun J, Banala S et al..  2020.  Directed Evolution of a Selective and Sensitive Serotonin Sensor via Machine Learning.. Cell. 183(7):1986-2002.e26.
Satou C, Sugioka T, Uemura Y, Shimazaki T, Zmarz P, Kimura Y, Higashijima S-ichi.  2020.  Functional Diversity of Glycinergic Commissural Inhibitory Neurons in Larval Zebrafish. Cell Reports. 30:3036-3050.e4.
Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T et al..  2020.  Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.. Science Advances. 6(25):eaaz6699.
Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OTunc, Gritton HJ, Romano MF, Gao R, Yu C-CJay, Tseng H-A et al..  2020.  Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.. Neuron. 107(3):470.
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience. Nature Reviews Neuroscience.
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience.. Nature Reviews Neuroscience. 21(2):61-79.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
2019
Faust JJ, Balabiyev A, Heddleston JM, Podolnikova NP, Baluch DPage, Chew T-L, Ugarova TP.  2019.  An actin-based protrusion originating from a podosome-enriched region initiates macrophage fusion.. Molecular Biology of the Cell. 30(17):2254-67.
Bera K, Kamajaya A, Shivange AV, Muthusamy AK, Nichols AL, Borden PM, Grant S, Jeon J, Lin E, Bishara I et al..  2019.  Biosensors show the pharmacokinetics of S-Ketamine in the endoplasmic reticulum.. Frontiers in Cellular Neuroscience. 13:499.
Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu T-L, Singh V, Graves AR, Huynh GH, Zhao Y et al..  2019.  Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.. Science (New York, N.Y.). 363(6424):eaau8302.
Zviran A, Mor N, Rais Y, Gingold H, Peles S, Chomsky E, Viukov S, Buenrostro JD, Scognamiglio R, Weinberger L et al..  2019.  Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules.. Cell Stem Cell. 24(2):328-341.e9.
Qureshi T, Sørensen C, Berghuis P, Jensen V, Dobszay MB, Farkas T, Dalen KTomas, Guo C, Hassel B, Utheim TPaaske et al..  2019.  The glutamine transporter Slc38a1 regulates GABAergic neurotransmission and synaptic plasticity.. Cerebal Cortex.
Jain A, Ulman V, Mukherjee A, Prakash M, Pimpale L, Munster S, Panfilio KA, Jug F, Grill SWA, Tomancak P et al..  2019.  Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation.. Nature Communications. 11(1):5604.
Kreutzberger AJB, Ji M, Aaron J, Mihaljević L, Urban S.  2019.  Rhomboid distorts lipids to break the viscosity-imposed speed limit of membrane diffusion.. Science (New York, N.Y.). 363(6426)
2018
Tian L, Or G, Wang Y, Shi G, Wang Y, Sun J, Papadopoulos S, Broussard G, Unger E, Deng W et al..  2018.  Aberrant calcium signaling in astrocytes inhibits neuronal excitability in a human Down syndrome stem cell model.. Cell Reports. 24(2):355-65.
Faust JJ, Christenson W, Doudrick K, Heddleston J, Chew T-L, Lampe M, Balabiyev A, Ros R, Ugarova TP.  2018.  Fabricating optical-quality glass surfaces to study macrophage fusion.. Journal of Visualized Experiments : JoVE. (133)