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2012
Xu N-long, Harnett MT, Williams SR, Huber D, O’Connor DH, Svoboda K, Magee JC.  2012.  Nonlinear dendritic integration of sensory and motor input during an active sensing task.. Nature. 492:247-51.
Chen Y, Wang Y, Zhang J, Deng Y, Jiang L, Song E, Wu XS, Hammer JA, Xu T, Lippincott-Schwartz J.  2012.  Rab10 and myosin-Va mediate insulin-stimulated GLUT4 storage vesicle translocation in adipocytes.. The Journal of cell biology. 198(4):545-60.
Hu T, Nunez-Iglesias J, Vitaladevuni S., Scheffer L., Xu S, Bolorizadeh M, Hess H, Fetter R, Chklovskii D.  2012.  Super-resolution using sparse representations over learned dictionaries: reconstruction of brain structure using electron microscopy.. arXiv.org .
Behra M, Gallardo V, Bradsher J, Torrado A, Elkahloun A, Idol J, Sheehy J, Zonies S, Xu L, Shaw K et al..  2012.  Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. BMC developmental biology. 12:6.
2011
Xie J, Zhao T, Lee T, Myers E, Peng H.  2011.  Anisotropic path searching for automatic neuron reconstruction.. Medical Image Analysis. 15:680-9.
Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E.  2011.  Automated reconstruction of neuronal morphology based on local geometrical and global structural models.. Neuroinformatics. 9(2-3):247-61.
Lasek AW, Lim J, Kliethermes CL, Berger KH, Joslyn G, Brush G, Xue L, Robertson M, Moore MS, Vranizan K et al..  2011.  An evolutionary conserved role for anaplastic lymphoma kinase in behavioral responses to ethanol.. PLoS One. 6(7):e22636.
Khrapunovich-Baine M, Menon V, Yang C-PHuang, Northcote PT, Miller JH, Angeletti RHogue, Fiser A, Horwitz SBand, Xiao H.  2011.  Hallmarks of molecular action of microtubule stabilizing agents: effects of epothilone B, ixabepilone, peloruside A, and laulimalide on microtubule conformation.. The Journal of biological chemistry. 286(13):11765-78.
Glasner D, Hu T, Nunez-Iglesias J, Scheffer L, Xu CS, Hess H, Fetter R, Chklovskii D, Basri R.  2011.  High resolution segmentation of neuronal tissues from low depth-resolution EM imagery.. 8th International Conference of Energy Minimization Methods in Computer Vision and Pattern Recognition Energy Minimization Methods in Computer Vision and Pattern Recognition. 6819:261-72.
Borghuis BG, Tian L, Xu Y, Nikonov SS, Vardi N, Zemelman BV, Looger LL.  2011.  Imaging light responses of targeted neuron populations in the rodent retina.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 31:2855-67.
Abdou M, He Q, Wen D, Zyaan O, Wang J, Xu J, Baumann A, Joseph J, WIlson TG, Li S et al..  2011.  Met and gce are functionally redundant in transducing the “status quo” action of juvenile hormone in Drosophila.. Insect Biochemistry and Molecular Biology. 41(12):938-45.
2010
Xie J, Zhao T, Lee T, Myers E, Peng H.  2010.  Automatic neuron tracing in volumetric microscopy images with anisotropic path searching.. Medical Image Computing and Computer-Assisted Intervention: MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 13:472-9.
Veeraraghavan A, Genkin AV, Vitaladevuni, iv S, Scheffer L, Xu CS, Hess H, Fetter R, Cantoni M, Knott G, Chklovskii DB.  2010.  Increasing depth resolution of electron microscopy of neural circuits using sparse tomographic reconstruction.. Computer Vision and Pattern Recognition (CVPR). :1767-74.
Song Q, Xu W, Smith SA, Gao L, Chappell WJ, R Cooks G, Ouyang Z.  2010.  Ion trap mass analysis at high pressure: an experimental characterization.. Journal of Mass Spectrometry. 45(1):26-34.
Xiang Y, Yuan Q, Vogt N, Looger LL, Jan LYeh, Jan YNung.  2010.  Light-avoidance-mediating photoreceptors tile the Drosophila larval body wall.. Nature. 468(7326):921-6.
Freundt EC, Yu L, Goldsmith CS, Welsh S, Cheng A, Yount B, Liu W, Frieman MB, Buchholz UJ, Screaton GR et al..  2010.  The open reading frame 3a protein of severe acute respiratory syndrome-associated coronavirus promotes membrane rearrangement and cell death.. Journal of virology. 84(2):1097-109.
Xing Y, Böcking T, Wolf M, Grigorieff N, Kirchhausen T, Harrison SC.  2010.  Structure of clathrin coat with bound Hsc70 and auxilin: mechanism of Hsc70-facilitated disassembly.. The EMBO Journal. 29(3):655-65.
Kabra M, Conery AL, O’Rourke EJ, Xie X, Vebjorn L., Jones TR, Ausubel FM, Ruvkun G, Carpenter AE, Freund Y.  2010.  Towards automated high-throughput screening of C. elegans on agar.. Arxiv.
2009
Xie J, Khan S, Shah M.  2009.  Automatic tracking of Escherichia coli in phase-contrast microscopy video.. IEEE Transactions on Bio-Medical Engineering. 56(2):390-9.
Khrapunovich-Baine M, Menon V, Verdier-Pinard P, Smith AB, Angeletti RHogue, Fiser A, Horwitz SBand, Xiao H.  2009.  Distinct pose of discodermolide in taxol binding pocket drives a complementary mode of microtubule stabilization.. Biochemistry. 48(49):11664-77.
Song Q, Smith SA, Gao L, Xu W, Volný M, Ouyang Z, R Cooks G.  2009.  Mass selection of ions from beams using waveform isolation in radiofrequency quadrupoles.. Analytical Chemistry. 81(5):1833-40.
Dementieva IS, Tereshko V, McCrossan ZA, Solomaha E, Araki D, Xu C, Grigorieff N, Goldstein SAN.  2009.  Pentameric assembly of potassium channel tetramerization domain-containing protein 5.. Journal of Molecular Biology. 387(1):175-91.
2008
Xie J, Khan S, Shah M.  2008.  Automatic tracking of Escherichia coli bacteria.. Medical Image Computing and Computer-Assisted Intervention: MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 11:824-32.
Kwon SYeon, Xiao H, Glover BP, Tjian R, Wu C, Badenhorst P.  2008.  The nucleosome remodeling factor (NURF) regulates genes involved in Drosophila innate immunity.. Developmental Biology. 316(2):538-47.
Jiang Y, Xie J, Tsui H-T.  2008.  Shape registration by optimally coding shapes.. IEEE Transactions on Information Technology in Biomedicine : A Publication of the IEEE Engineering in Medicine and Biology Society. 12(5):627-35.