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2012
Fiolka R, Shao L, E Rego H, Davidson MW, Gustafsson MGL.  2012.  Time-lapse two-color 3D imaging of live cells with doubled resolution using structured illumination.. Proceedings of the National Academy of Sciences of the United States of America. 109(14):5311-5.
Joseph RM, Heberlein U.  2012.  Tissue-specific activation of a single gustatory receptor produces opposing behavioral responses in Drosophila.. Genetics. 192(2):521-32.
Madisen L, Mao T, Koch H, Zhuo J-min, Berenyi A, Fujisawa S, Hsu Y-WA, Garcia AJ, Gu X, Zanella S et al..  2012.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.. Nature Neuroscience. 15(5):793-802.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7:e38011.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
Lionnet T, Singer RH.  2012.  Transcription goes digital.. EMBO Reports. 13(4):313-21.
Revyakin A, Zhang Z, Coleman RA, Li Y, Inouye C, Lucas JK, Park S-R, Chu S, Tjian R.  2012.  Transcription initiation by human RNA polymerase II visualized at single-molecule resolution.. Genes & Development. 26:1691-702.
Quan X-jiang, Ramaekers A, Hassan BA.  2012.  Transcriptional control of cell fate specification: lessons from the fly retina.. Current Topics in Developmental Biology. 98:259-76.
Behra M, Gallardo V, Bradsher J, Torrado A, Elkahloun A, Idol J, Sheehy J, Zonies S, Xu L, Shaw K et al..  2012.  Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. BMC developmental biology. 12:6.
Lapidus KAB, Nwokafor C, Scott D, Baroni TE, Tenenbaum SA, Hiroi N, Singer RH, Czaplinski K.  2012.  Transgenic expression of ZBP1 in neurons suppresses cocaine-associated conditioning.. Learning & Memory. 19(2):35-42.
Mellert DJ, Truman JW.  2012.  Transvection is common throughout the Drosophila genome.. Genetics. 191(4):1129-41.
Roh-Johnson M, Shemer G, Higgins CD, McClellan JH, Werts AD, U Tulu S, Gao L, Betzig E, Kiehart DP, Goldstein B.  2012.  Triggering a cell shape change by exploiting preexisting actomyosin contractions.. Science. 335(6073):1232-5.
2013
Crocker J, Stern DL.  2013.  TALE-mediated modulation of transcriptional enhancers in vivo.. Nature Methods. 10(8):762-7.
Kapfhamer D, Taylor S, Zou ME, Lim JP, Kharazia V, Heberlein U.  2013.  Taok2 controls behavioral response to ethanol in mice.. Genes, Brain, and Behavior. 12(1):87-97.
Hires SAndrew, Pammer L, Svoboda K, Golomb D.  2013.  Tapered whiskers are required for active tactile sensation.. eLife. 2:e01350.
Trcek T, Sato H, Singer RH, Maquat LE.  2013.  Temporal and spatial characterization of nonsense-mediated mRNA decay.. Genes & Development. 27(5):541-51.
Rah J-C, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD et al..  2013.  Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.. Frontiers in Neural Circuits. 7:177.
Shi D, Nannenga BL, Iadanza MG, Gonen T.  2013.  Three-dimensional electron crystallography of protein microcrystals.. eLife. 2:01345.
Fiolka R.  2013.  Three-dimensional live microscopy beyond the diffraction limit.. Journal of Optics. 15:094002.
Wu B, Singer RH, Mueller JD.  2013.  Time-integrated fluorescence cumulant analysis and its application in living cells.. Methods in Enzymology. 518:99-119.
Amat F, Keller PJ.  2013.  Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy.. Development, Growth and Differentiation. 55(4):563-78.
Cardona A..  2013.  Towards semi-automatic reconstruction of neural circuits.. Neuroinformatics. 11(1):31-3.
Paraq T, Butler V, Chklovskii D.  2013.  Tracking multiple neurons on worm images.. Medical Imaging 2013: Image Processing. 8669:86692P.
Davis FP, Eddy SR.  2013.  Transcription factors that convert adult cell identity are differentially polycomb repressed.. PLoS One. 8(5):e63407.
Satou C, Kimura Y, Hirata H, Suster ML, Kawakami K, Higashijima S-I.  2013.  Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons. Development. 140:3927-3931.