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In Press
Gonen T, Waksman G..  In Press.  Recent progress in membrane protein structures and investigation methods.. Current Opinion in Structural Biology. 22(4):467-8.
2026
Yserentant K, Chen Y, Hong K, Kuang Y, Bhowmick A, Charles-Orszag A, Lord SJ, Lu L, Hou K, Mann SI et al..  2026.  BPS2026 – De novo-designed rhodamine binders for advanced fluorescence microscopy. bioRxiv.
Miller DM, Elangovan A, Belcher HA, Lee RM, Hobson CM, Crosley K, Hart DM, Laverty BBannish E, Guthold M, Hudson NE.  2026.  BPS2026 – Real-time visualization and analysis of fibrin polymerization. Biophysical Journal. 125(4):227a-228a.
Henninger J, Hoffmann M, Kadobianskyi M, Veith J, Berlage C, Groneberg A, Markov D, Schulze L, Svanidze A, Maler L et al..  2026.  Brain-wide hierarchical and sexually dimorphic tuning for social vocalizations. bioRxiv.
Codol O, Asclipe M, Sobinov AR, Chen Z, Park J, Hatsopoulos NG, Dudman JT, Gallego JA, Lajoie G, Perich MG.  2026.  Evolutionarily conserved neural dynamics across mice, monkeys, and humans. bioRxiv.
Xu W, De La Cruz N, Woods A, Lokshtanov D, Gao S, Khan N, Wright S, Florian-Rodriguez ME, McIntire DD, Duryea EL et al..  2026.  Midgestation metabolic constraint in purine metabolism drives distinct strategies for placenta and fetal growth. bioRxiv.
Vishwanath AAmrapali, Comyn T, Mira RG, Brossier C, Pascual-Caro C, Faour M, Boumendil K, Chintaluri C, Ramon-Duaso C, Fan R et al..  2026.  Mitochondrial Ca efflux controls neuronal metabolism and long-term memory across species.. Nat Metab.
Gillet V, Sayre ME, Badalamente GS, Schieber NL, Tedore K, Funke J, Heinze S.  2026.  A multi-resolution imaging and analysis pipeline for comparative circuit reconstruction in insects. bioRxiv.
Payne A, Heinz DA, Santiago C, Hagopian LL, Ganasi RSceptre, Quirk C, Hartzell AL, Leutgeb JK, Leutgeb S, Bloodgood BL.  2026.  NPAS4 refines spatial and temporal firing in CA1 pyramidal neurons. bioRxiv.
Bohic M, Salamone PCeleste, Zuo W, Negm A, Fulton SLeilani, Du S, Jayakumar S, Keating J, Soubeyre V, Gradwell MAndrew et al..  2026.  Oxytocin modulation of spinal circuits drives therapeutic benefits of massage. bioRxiv.
Schuty B, Garcia MJose, Khuon S, Malacrida LS.  2026.  Phasor analysis of RGB camera data enables fluorescence microscopy unmixing and brightfield segmentation in a commercial microscope. bioRxiv.
Valinsky WC, Ray RP, Schaefer KS, Grimm JB, Nicolini C, Lavis LD, Clapham DE.  2026.  Phenotypic CRISPR screens identify NLRX1 as an essential activator of the human mitochondrial permeability transition. Proceedings of the National Academy of Sciences. 123:e2535298123.
Goldschmidt D, Guo Y, Chitnis SS, Christoforou C, Turner-Evans D, Ribeiro C, Hermundstad AM, Jayaraman V, Haberkern H.  2026.  Recent experience and internal state shape local search strategies in flies. Curr Biol.
Goldschmidt D, Guo Y, Chitnis SS, Christoforou C, Turner-Evans D, Ribeiro C, Hermundstad AM, Jayaraman V, Haberkern H.  2026.  Recent experience and internal state shape local search strategies in flies. Curr Biol.
Gándara L, Martelli F, Ravenscroft T, Crocker J, Batterham P.  2026.  Rethinking insecticide toxicology for the 21st century.. Insect Biochem Mol Biol. :104502.
Cheng A, DeWeese T, Zhou Y, Sueoka Y, Koukuntla S, Green M, Cullen K, Knierim J, Graves A, Harris T.  2026.  SCREWx: A Screwless, Chronic, Recoverable, and Lightweight Neuropixels fixture for freely-moving rodents. bioRxiv.
Cheng A, DeWeese T, Zhou Y, Sueoka Y, Koukuntla S, Green M, Cullen K, Knierim J, Graves A, Harris T.  2026.  SCREWx: A Screwless, Chronic, Recoverable, and Lightweight Neuropixels fixture for freely-moving rodents. bioRxiv.
Choi H, Liao Y-C, Yoon YJ, Grimm J, Wang N, Lavis LD, Singer RH, Lippincott-Schwartz J.  2026.  Secretome translation shaped by lysosomes and lunapark-marked ER junctions.. Nature. (649):227–236.
Esakova OA, Jung J, Lee H, Cho SHyun, Alumasa J, Schwalm EL, Grove TL, Bauerle MR, Hafenstein SL, Yu Z et al..  2026.  Structural Basis for C8 methylation of 23S ribosomal RNA by Cfr. bioRxiv.
Abidi AA, Cattoglio C, Tang NN, Fan VB, Dailey GM, Hay AD, Kunamaneni P, Milkie DE, Darzacq X, Betzig E et al..  2026.  Unstructured transcription factor interactions enable emergent specificity.. Science. :eaeb6487.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep learning enables identification of cell types and clusters (iCTC) in immune tumor ecosystems for prognostic assessment in cancer. Clinical Cancer Research. 31:B049-B049.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.