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2007
Fitzgerald JE, Jha AK, Colubri A, Sosnick TR, Freed KF.  2007.  Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.. Protein science : a publication of the Protein Society. 16(10):2123-39.
Jain V, Murray JF, Roth F, Turaga S, Zhigulin V, Briggman KL, Helmstaedter MN, Denk W, H Seung S.  2007.  Supervised learning of image restoration with convolutional networks.. IEEE 11th International Conference on Computer Vision. 2:1-8.
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S..  2007.  Supervised Learning of Image Restoration with Convolutional Networks. IEEE 11th International Conference on Computer Vision, 2007. ICCV 2007.
2008
Ji N, Shroff H, Zhong H, Betzig E.  2008.  Advances in the speed and resolution of light microscopy.. Current Opinion in Neurobiology. 18(6):605-16.
Ji N, Shroff H, Zhong H, Betzig E.  2008.  Advances in the speed and resolution of light microscopy. (With commentary). Current Opinion in Neurobiology. 18(6):605-16.
Andrásfalvy BK, Makara JK, Johnston D, Magee J.C..  2008.  Altered synaptic and non-synaptic properties of CA1 pyramidal neurons in Kv4.2 knockout mice.. The Journal of Physiology. 586(16):3881-92.
Kent A, Jha AK, Fitzgerald JE, Freed KF.  2008.  Benchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragment.. The journal of physical chemistry. B. 112(19):6175-86.
Ji N, Ostroverkhov V, Tian CS, Shen YR.  2008.  Characterization of vibrational resonances of water-vapor interfaces by phase-sensitive sum-frequency spectroscopy.. Physical Review Letters. 100(9):096102.
Jarsky T, Mady R, Kennedy B, Spruston N.  2008.  Distribution of bursting neurons in the CA1 region and the subiculum of the rat hippocampus.. Journal of Comparative Neurology. 506(4):535-47.
Ji N, Magee JC, Betzig E.  2008.  High-speed, low-photodamage nonlinear imaging using passive pulse splitters. (With commentary). Nature Methods. 5(2):197-202.
Ji N, Magee JC, Betzig E.  2008.  High-speed, low-photodamage nonlinear imaging using passive pulse splitters.. Nature Methods. 5(2):197-202.
Kus V, Prazak T, Brauner P, Hensler M, Kuda O, Flachs P, Janovska P, Medrikova D, Rossmeisl M, Jilkova Z et al..  2008.  Induction of muscle thermogenesis by high-fat diet in mice: association with obesity-resistance.. American Journal of Physiology. Endocrinology and Metabolism. 295(2):E356-67.
Kus V, Prazak T, Brauner P, Hensler M, Kuda O, Flachs P, Janovska P, Medrikova D, Rossmeisl M, Jilkova Z et al..  2008.  Induction of muscle thermogenesis by high-fat diet in mice: association with obesity-resistance.. American Journal of Physiology. Endocrinology and Metabolism. 295(2):E356-67.
Tian C, Ji N, Waychunas GA, Y Shen R.  2008.  Interfacial structures of acidic and basic aqueous solutions.. Journal of the American Chemical Society. 130:13033-9.
Jain V, H Seung S.  2008.  Natural image denoising with convolutional networks.. Neural Information Processing Systems.
Jiang Y, Xie J, Tsui H-T.  2008.  Shape registration by optimally coding shapes.. IEEE Transactions on Information Technology in Biomedicine : A Publication of the IEEE Engineering in Medicine and Biology Society. 12(5):627-35.
Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, Braslavsky I, Causey M, Colonell J, Dimeo J, J Efcavitch W et al..  2008.  Single-molecule DNA sequencing of a viral genome.. Science. 320(5872):106-9.
Kurylas AE, Rohlfing T, Krofczik S, Jenett A, Homberg U.  2008.  Standardized atlas of the brain of the desert locust, Schistocerca gregaria.. Cell and Tissue Research. 333(1):125-45.
Hsu J-Y, Juven-Gershon T, Marr MT, Wright KJ, Tjian R, Kadonaga JT.  2008.  TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription.. Genes & Development. 22(17):2353-8.
Pfeiffer BD, Jenett A, Hammonds AS, Ngo T-TB, Misra S, Murphy C, Scully A, Carlson JW, Wan KH, Laverty TR et al..  2008.  Tools for neuroanatomy and neurogenetics in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 105:9715-20.
Wang Z, Pan Y, Li W, Jiang H, Chatzimanolis L, Chang J, Gong Z, Liu L.  2008.  Visual pattern memory requires foraging function in the central complex of Drosophila.. Learning & Memory. 15(3):133-42.
2009
Junek S, Chen T-W, Alevra M, Schild D.  2009.  Activity correlation imaging: visualizing function and structure of neuronal populations.. Biophysical Journal. 96(9):3801-9.
Liu X, Long F, Peng H, Aerni SJ, Jiang M, Sánchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S et al..  2009.  Analysis of cell fate from single-cell gene expression profiles in C. elegans.. Cell. 139(3):623-33.
Fuller CW, Middendorf LR, Benner SA, Church GM, Harris T, Huang X, Jovanovich SB, Nelson JR, Schloss JA, Schwartz DC et al..  2009.  The challenges of sequencing by synthesis.. Nature Biotechnology. 27:1013-23.
Jayaraman V, Laurent G.  2009.  Circuit dynamics and neural coding in the locust olfactory system.. The New Encyclopedia of Neuroscience.