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2026
McLaughlin CN, Ji H, Dong KX, Xu C, Wong KKin Lam, Li Z, Luginbuhl DJ, Xu C, Lyu C, Qin W et al..  2026.  Endocytome profiling uncovers cell-surface protein dynamics underlying neuronal connectivity.. Neuron.
Utgaard ME, Caillier A, Chandrasekar S, Tidei JJ, Balasubramanian H, Lee RM, Puls O, Khuon S, Aaron J, Chew T-L et al..  2026.  Mechanically-induced Septin Networks protect nuclear integrity. bioRxiv.
Bohic M, Salamone PCeleste, Zuo W, Negm A, Fulton SLeilani, Du S, Jayakumar S, Keating J, Soubeyre V, Gradwell MAndrew et al..  2026.  Oxytocin modulation of spinal circuits drives therapeutic benefits of massage. bioRxiv.
2025
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Uryu K, Zhao X, Shiozaki M, Yu Z.  2025.  Cryo-electron Microscopy of Vitreous Sections (CEMOVIS) application for model organisms. Microscopy and Microanalysis. 31(1(Supp)):ozaf048.484.
Joo JHyuck, Kasberg W, Douglas S, Udoh U, Carisey A, Messing J, Wang Y-D, Narina S, Pruett-Miller SM, Labelle M et al..  2025.  ER-to-Golgi trafficking is a nutrient-sensitive checkpoint linking glucose starvation to cell surface remodeling. bioRxiv.
Alshaabi T, Milkie D, Liu G, Shirazinejad C, Hong J, Achour K, Görlitz F, Milunovic-Jevtic A, Simmons C, Abuzahriyeh I et al..  2025.  Fourier-Based 3D Multistage Transformer for Aberration Correction in Multicellular Specimens. Research Square.
Alshaabi T, Milkie DE, Liu G, Shirazinejad C, Hong JL, Achour K, Görlitz F, Milunovic-Jevtic A, Simmons C, Abuzahriyeh IS et al..  2025.  Fourier-based three-dimensional multistage transformer for aberration correction in multicellular specimens.. Nat Methods.
Santos NDos, Aquino A, Preußer F, Rusak FRojas, Jandrey EHelena Far, Uno M, Furuya TKatsue, Lancellotti CLucia Pent, Maldaun MVinicius C, Chammas R et al..  2025.  Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs. Cancers. 17:3851.
Santos NDos, Aquino A, Preußer F, Rusak FRojas, Jandrey EHelena Far, Uno M, Furuya TKatsue, Lancellotti CLucia Pent, Maldaun MVinicius C, Chammas R et al..  2025.  Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs. Cancers. 17:3851.
Marques MP, Sun B, Park Y-J, Jackson T, Lu T-C, Qi Y, Harrison E, Wang MC, Venkatachalam K, Pasha OMoussa et al..  2025.  In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila. eLife.
Wang W, Ruan X, Liu G, Milkie DE, Li W, Betzig E, Upadhyayula S, Gao R.  2025.  Mesoscale volumetric fluorescence imaging at nanoscale resolution by photochemical sectioning. Science. 390:eadr9109.
Mao S, Song R, Jin S, Pang S, Jovanovic A, Zimmerman A, Li P, Wu X, Wendland MF, Lin K et al..  2025.  Multicilia dynamically transduce Sonic Hedgehog signaling to regulate choroid plexus functions. Cell Reports.
Fu T-M, Liu G, Milkie DE, Ruan X, Görlitz F, Shi Y, Ferro V, Divekar NS, Wang W, York HM et al..  2025.  A multimodal adaptive optical microscope for in vivo imaging from molecules to organisms. bioRxiv.
Liu Y, Stergiopoulou V, Chuah J, Bezzam E, Both G-J, Unser M, Sage D, Dong J.  2025.  Revisiting PSF models: Unifying framework and high-performance implementation.. J Microsc.
Berg S, Beckett IR, Costa M, Schlegel P, Januszewski M, Marin EC, Nern A, Preibisch S, Qiu W, Takemura S-ya et al..  2025.  Sexual dimorphism in the complete connectome of the Drosophila male central nervous system. bioRxiv.
Uchigashima M, Iguchi R, Fujii K, Shiku K, Kumar P, Liu X, Isogai M, Hoshino C, Abe M, Nozumi M et al..  2025.  Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain.. Nat Commun. 16(1):9705.
2024
Updegrove TB, Delerue T, Anantharaman V., Cho H, Chan C, Nipper T, Choo-Wosoba H, Jenkins L, Zhang L, Su Y et al..  2024.  Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity. Sci Adv. 10(42):eadq0791.
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
Chareyre S, Li X, Anjuwon-Foster BR, Updegrove TB, Clifford S, Brogan AP, Su Y, Zhang L, Chen J, Shroff H et al..  2024.  Cell division machinery drives cell-specific gene activation during differentiation in .. Proc Natl Acad Sci U S A. 121(13):e2400584121.
Udeshi ND, Xu C, Jiang Z, Gao SMax, Yin Q, Luo W, Carr SA, Davis MM, Li J.  2024.  Cell-surface Milieu Remodeling in Human Dendritic Cell Activation.. J Immunol.
Nern A, Loesche F, Takemura S-ya, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC et al..  2024.  Connectome-driven neural inventory of a complete visual system. Nature.
Rivlin PK, Januszewski M, Longden KD, Neace E, Scheffer LK, Ordish C, Clements J, Phillips E, Smith N, Takemura S et al..  2024.  Connectomic Analysis of Mitochondria in the Central Brain of Drosophila. bioRxiv.
Yaguchi K, Saito D, Menon T, Matsura A, Mizutani T, Kotani T, Nair S, Uehara R.  2024.  Haploidy-linked cell proliferation defects limit larval growth in Zebrafish. Open Biol.. 14(10):240126.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.