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2023
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J et al..  2023.  BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.. Nature Methods. 20(6)
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J et al..  2023.  BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.. Nature Methods. 20(6)
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S Zipursky L, Kurmangaliyev YZ.  2023.  Brain wiring determinants uncovered by integrating connectomes and transcriptomes.. Current Biology. 33(18):3998-3998.
Zhu J, Boivin J-C, Pang S, C Xu S, Lu Z, Saalfeld S, Hess HF, Ohyama T.  2023.  Comparative connectomics and escape behavior in larvae of closely related Drosophila species.. Current Biology.
Oldak B, Wildschutz E, Bondarenko V, Comar M-Y, Zhao C, Aguilera-Castrejon A, Tarazi S, Viukov S, Pham TXuan Ai, Ashouokhi S et al..  2023.  Complete human day 14 post-implantation embryo models from naïve ES cells. Nature.
Zhao A, Nern A, Koskela S, Dreher M, Erginkaya M, Laughland CW, Ludwig HDF, Thomson AG, Hoeller J, Parekh R et al..  2023.  A comprehensive neuroanatomical survey of the Drosophila Lobula Plate Tangential Neurons with predictions for their optic flow sensitivity.. bioRxiv.
Takemura S-ya, Hayworth KJ, Huang GB, Januszewski M, Lu Z, Marin EC, Preibisch S, C Xu S, Bogovic J, Champion AS et al..  2023.  A Connectome of the Male Drosophila Ventral Nerve Cord. bioRxiv.
Chen Z, Shiozaki M, Haas KM, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD et al..  2023.  De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography. Cell. 186(23):5041-5053.e19.
Liu Y, Huang Z, Liu H, Ji Z, Arora A, Cai D, Wang H, Liu M, Simko EAJ, Zhang Y et al..  2023.  DNA-initiated epigenetic cascades driven by C9orf72 hexanucleotide repeat.. Neuron. 111(8):1205-21.
Syeda A, Zhong L, Tung R, Long W, Pachitariu M, Stringer C.  2023.  Facemap: a framework for modeling neural activity based on orofacial tracking. Nature Neuroscience.
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..  2023.  Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..  2023.  Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..  2023.  Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Zhang Y, Looger LL.  2023.  Fast and sensitive GCaMP calcium indicators for neuronal imaging.. The Journal of Physiology.
Zhang Z, Feng Z, Zhao X, Jean D, Yu Z, Chapman ER.  2023.  Functionalization and higher-order organization of liposomes with DNA nanostructures.. Nature Communications. 14(1):5256.
Zhang Z, Feng Z, Zhao X, Jean D, Yu Z, Chapman ER.  2023.  Functionalization and higher-order organization of liposomes with DNA nanostructures.. Nature Communications. 14(1):5256.
Zhang H, P Rich D, Lee AK, Sharpee TO.  2023.  Hippocampal spatial representations exhibit a hyperbolic geometry that expands with experience.. Nature Neuroscience. 26(1):131-139.
Wright KM, DiNapoli SR, Miller MS, P Azurmendi A, Zhao X, Yu Z, Chakrabarti M, Shi WX, Douglass J, Hwang MS et al..  2023.  Hydrophobic interactions dominate the recognition of a KRAS G12V neoantigen.. Nature Communications. 14(1):5063.
Wright KM, DiNapoli SR, Miller MS, P Azurmendi A, Zhao X, Yu Z, Chakrabarti M, Shi WX, Douglass J, Hwang MS et al..  2023.  Hydrophobic interactions dominate the recognition of a KRAS G12V neoantigen.. Nature Communications. 14(1):5063.
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S. Zipursky L, Kurmangaliyev YZ.  2023.  Identifying determinants of synaptic specificity by integrating connectomes and transcriptomes. bioRxiv.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV et al..  2023.  In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes.. Nature Structural & Molecular Biology. 30(3):360-9.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV et al..  2023.  In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes.. Nature Structural & Molecular Biology. 30(3):360-9.
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O’Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2023.  Large-scale brain-wide neural recording in nonhuman primates. bioRxiv.
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O’Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2023.  Large-scale brain-wide neural recording in nonhuman primates. bioRxiv.
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2023.  A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing. bioRxiv.