Biblio

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2025
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. Nat Methods.
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Bulanchuk P, Koay SAnn, Romani S.  2025.  A Class of Markovian self-reinforcing processes with power-law distributions. arXiv.
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.  2025.  Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Reyna-Neyra A, Pandya RD, Lackner EM, Pang S, Li W-P, C. Xu S, Zugates C, Burdyniuk M, Pandya VD, Weisz OA et al..  2025.  Compartmentalization of the endoplasmic reticulum in mouse kidney proximal tubule epithelial cells. Physiology. 40:1280.
Erginkaya M, Cruz T, Brotas M, Steck K, Nern A, Torrão F, Varela N, Bock D, Reiser M, M Chiappe E.  2025.  A competitive disinhibitory network for robust optic flow processing in Drosophila. Nat Neurosci..
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Park J, Polidoro P, Fortunato C, Arnold J, Mensh B, Gallego JA, Dudman JT.  2025.  Conjoint specification of action by neocortex and striatum. Neuron.
Yin Y, Hoeller J, Mathiasen A, Tsang J, Charrier MEstelle, Cardona A.  2025.  The connectome interpreter toolkit. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Lin H, Yang B, Ding L, Yang Y-Y, Holt MV, Jung SYun, Zhang B, Wang MC, Wang J.  2025.  COOKIE-Pro: covalent inhibitor binding kinetics profiling on the proteome scale.. Nat Commun. 16(1):8373.
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.  2025.  Cortical control of innate behavior from subcortical demonstration. bioRxiv.
Lollar MJ, Kim E, Stern DL, Pool JE.  2025.  Courtship song differs between African and European populations of Drosophila melanogaster and involves a strong effect locus. G3 Genes|Genomes|Genetics.
Roberts R, Giez C, Dhawan S, Pang S, Randel N, Zhiyuan L, Gong H, Dekens L, DiFrisco J, C Xu S et al..  2025.  Cross-species comparative connectomics reveals the evolution of an olfactory circuit. bioRxiv.
Guan Y, Yu Y, Gao SMax, Ding L, Zhao Q, Wang M.  2025.  Cross-Tissue Coordination between SLC Nucleoside Transporters Regulates Reproduction in Caenorhabditis elegans. PLoS Genet.
Uryu K, Zhao X, Shiozaki M, Yu Z.  2025.  Cryo-electron Microscopy of Vitreous Sections (CEMOVIS) application for model organisms. Microscopy and Microanalysis. 31(1(Supp)):ozaf048.484.
2024
Krasley AT, Li E, Galeana JM, Bulumulla C, Beyene AG, Demirer GS.  2024.  Carbon Nanomaterial Fluorescent Probes and Their Biological Applications. Chemical Reviews.
Chareyre S, Li X, Anjuwon-Foster BR, Updegrove TB, Clifford S, Brogan AP, Su Y, Zhang L, Chen J, Shroff H et al..  2024.  Cell division machinery drives cell-specific gene activation during differentiation in .. Proc Natl Acad Sci U S A. 121(13):e2400584121.
Betzig E.  2024.  A Cell Observatory to reveal the subcellular foundations of life.. Nat Methods.
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2024.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. bioRxiv.
Udeshi ND, Xu C, Jiang Z, Gao SMax, Yin Q, Luo W, Carr SA, Davis MM, Li J.  2024.  Cell-surface Milieu Remodeling in Human Dendritic Cell Activation.. J Immunol.
Kapustina M, Zhang AA, Tsai JYJ, Bristow BN, Kraus L, Sullivan KE, Erwin SR, Wang L, Stach TR, Clements J et al..  2024.  The cell-type-specific spatial organization of the anterior thalamic nuclei of the mouse brain.. Cell Reports. 43(3):113842.