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2025
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Kolb I, Hasseman JP, Matsumoto A, Jensen TP, Kopach O, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. eLife.
Pandya RD, Lackner EM, C Xu S, Zugates C, Burdyniuk M, Reyna-Neyra A, Pandya VD, Li W-P, Pang S, Weisz OA et al..  2025.  Illuminating Renal Proximal Tubule Architecture through High-Resolution Volume EM and Machine Learning Analysis.. J Am Soc Nephrol.
Ruetten VMS, Zheng W, Siwanowicz I, Mensh BD, Eddison M, Hu A, Chi Y, Lemire AL, Guo C, Kadobianskyi M et al..  2025.  Imaging cellular activity simultaneously across all organs of a vertebrate reveals body-wide circuits. bioRxiv.
Chen T-W, Bin Huang X-, Plutkis SE, Holland KL, Lavis LD, Lin B-J.  2025.  Imaging neuronal voltage beyond the scattering limit. Nat Methods.
Zheng Y, Cai R, Wang K, Zhang J, Zhuo Y, Dong H, Zhang Y, Wang Y, Deng F, Ji E et al..  2025.  In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors. Science.
Marques MP, Sun B, Park Y-J, Jackson T, Lu T-C, Qi Y, Harrison E, Wang MC, Venkatachalam K, Pasha OMoussa et al..  2025.  In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila. bioRxiv.
Beyene AG.  2025.  (Invited) Nanoscale Insights into Dopamine Release: Single-Strand DNA Functionalized SWCNTs in Neuroscience. ECS Meeting Abstracts. MA2025-01:933.
Tran S, Emtage J, Zhang C, Liu X, Lecoeuche M, Andreev A, Oikonomou G, Narayan S, Garcia B, Cammidge T et al..  2025.  stk32a links sleep homeostasis to suppression of sensory and motor systems. bioRxiv.
2024
Marvin JS, Kokotos AC, Kumar M, Pulido C, Tkachuk AN, Yao JShuxin, Brown TA, Ryan TA.  2024.  iATPSnFR2: a high dynamic range fluorescent sensor for monitoring intracellular ATP. Proc Natl Acad Sci U S A.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae. bioRxiv.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.. Zebrafish.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Gmaz JM, Keller JA, Dudman JT, Gallego JA.  2024.  Integrating across behaviors and timescales to understand the neural control of movement.. Current Opinion in Neurobiology. 85:102843.
Hoang N, Sardaripour N, Ramey GD, Schilling K, Liao E, Chen Y, Park JHyun, Bledsoe X, Landman BA, Gamazon ER et al..  2024.  Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.. PLoS Biol. 22(9):e3002782.
Schneider MC, Hinterer F, Jesacher A, Schütz GJ.  2024.  Interactive simulation and visualization of point spread functions in single molecule imaging.. Optics Communications.
Coscia SM, Moore AS, Thompson CP, Tirrito CF, E Ostap M, Holzbaur ELF.  2024.  An interphase actin wave promotes mitochondrial content mixing and organelle homeostasis.. Nat Commun. 15(1):3793.
Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J et al..  2024.  IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer.. Cell.
Yang S, Heckmann J, Taha A, Gao S, Steinke S, Hust M, Prüß H, Furukawa H, Geis C, Heckmann M et al..  2024.  It only takes seconds for a human monoclonal autoantibody to inhibit N-methyl-D-aspartate receptors. bioRxiv.
Peale DR, Hess H, Lee P.R, Cardona A, Bock DD, Schneider-Mizell C, Fetter RD, Lee W-P, Robinson CG, Iyer N et al..  2024.  iTome Volumetric Serial Sectioning Apparatus for TEM. bioRxiv.
2023
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S. Zipursky L, Kurmangaliyev YZ.  2023.  Identifying determinants of synaptic specificity by integrating connectomes and transcriptomes. bioRxiv.
Balasubramanian H, Hobson CM, Chew T-L, Aaron JS.  2023.  Imagining the future of optical microscopy: everything, everywhere, all at once.. Communications Biology. 6(1):1096.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV et al..  2023.  In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes.. Nature Structural & Molecular Biology. 30(3):360-9.
Ahmed M, Rajagopalan AE, Pan Y, Li Y, Williams DL, Pedersen EA, Thakral M, Previero A, Close KC, Christoforou CP et al..  2023.  Input density tunes Kenyon cell sensory responses in the Drosophila mushroom body.. Current Biology.