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2026
Kolb I, Hasseman JP, Matsumoto A, Jensen TP, Kopach O, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G et al..  2026.  iGABASnFR2 is an improved genetically encoded protein sensor of GABA. eLife.
Shtengel DH, Shtengel G, C. Xu S, Hess HF.  2026.  Image analysis tools for Electron Microscopy. bioRxiv.
Azur RAngelo G, Feliciano D, Espinosa-Medina I, Adhikari R, Lilao-Garzón J, Jansen E, Yang C-P, Lee T.  2026.  Imp1 acts as a dosage- and stage-dependent temporal rheostat orchestrating radial glial fate transitions and cortical morphogenesis. eLife.
2025
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Marvin JS, Mächler P, Meng C, Ates T, Patel RH, Adhikari R, Makurath MA, Ku Z, Feliciano D, Atasoy D et al..  2025.  iGlucoSnFR2: A genetically encoded fluorescent sensor for measuring intracellular or extracellular glucose in vivo in mouse brain.. Sci Adv. 11(46):eadz3889.
Pandya RD, Lackner EM, C Xu S, Zugates C, Burdyniuk M, Reyna-Neyra A, Pandya VD, Li W-P, Pang S, Weisz OA et al..  2025.  Illuminating renal proximal tubule architecture through high-resolution volume em and machine learning analysis.. J Am Soc Nephrol.
Ruetten VMS, Zheng W, Siwanowicz I, Mensh BD, Eddison M, Hu A, Chi Y, Lemire AL, Guo C, Kadobianskyi M et al..  2025.  Imaging cellular activity simultaneously across all organs of a vertebrate reveals body-wide circuits. bioRxiv.
Chen T-W, Bin Huang X-, Plutkis SE, Holland KL, Lavis LD, Lin B-J.  2025.  Imaging neuronal voltage beyond the scattering limit. Nat Methods.
Azur RAngelo G, Feliciano D, Espinosa-Medina I, Adhikari R, Lilao-Garzón J, Jensen E, Yang C-P, Lee T.  2025.  Imp1 acts as a dosage- and stage-dependent temporal rheostat orchestrating radial glial fate transitions and cortical morphogenesis. bioRxiv.
Zheng Y, Cai R, Wang K, Zhang J, Zhuo Y, Dong H, Zhang Y, Wang Y, Deng F, Ji E et al..  2025.  In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors. Science.
Santos NDos, Aquino A, Preußer F, Rusak FRojas, Jandrey EHelena Far, Uno M, Furuya TKatsue, Lancellotti CLucia Pent, Maldaun MVinicius C, Chammas R et al..  2025.  Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs. Cancers. 17:3851.
Santos NDos, Aquino A, Preußer F, Rusak FRojas, Jandrey EHelena Far, Uno M, Furuya TKatsue, Lancellotti CLucia Pent, Maldaun MVinicius C, Chammas R et al..  2025.  Innovative In Vivo Imaging and Single Cell Expression from Tumor Bulk and Corpus Callosum Reveal Glioma Stem Cells with Unique Regulatory Programs. Cancers. 17:3851.
Marques MP, Sun B, Park Y-J, Jackson T, Lu T-C, Qi Y, Harrison E, Wang MC, Venkatachalam K, Pasha OMoussa et al..  2025.  In-situ glial cell-surface proteomics identifies pro-longevity factors in Drosophila. eLife.
Lalit M, Funke J.  2025.  An investigation of unsupervised cell tracking and interactive fine-tuning. 2025 IEEE/CVF International Conference on Computer Vision Workshops (ICCVW).
Beyene AG.  2025.  (Invited) Nanoscale Insights into Dopamine Release: Single-Strand DNA Functionalized SWCNTs in Neuroscience. ECS Meeting Abstracts. MA2025-01:933.
Tran S, Emtage J, Zhang C, Liu X, Lecoeuche M, Andreev A, Oikonomou G, Narayan S, Garcia B, Cammidge T et al..  2025.  stk32a links sleep homeostasis to suppression of sensory and motor systems. bioRxiv.
2024
Marvin JS, Kokotos AC, Kumar M, Pulido C, Tkachuk AN, Yao JShuxin, Brown TA, Ryan TA.  2024.  iATPSnFR2: a high dynamic range fluorescent sensor for monitoring intracellular ATP. Proc Natl Acad Sci U S A.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae. bioRxiv.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.. Zebrafish.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Gmaz JM, Keller JA, Dudman JT, Gallego JA.  2024.  Integrating across behaviors and timescales to understand the neural control of movement.. Current Opinion in Neurobiology. 85:102843.
Hoang N, Sardaripour N, Ramey GD, Schilling K, Liao E, Chen Y, Park JHyun, Bledsoe X, Landman BA, Gamazon ER et al..  2024.  Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.. PLoS Biol. 22(9):e3002782.
Schneider MC, Hinterer F, Jesacher A, Schütz GJ.  2024.  Interactive simulation and visualization of point spread functions in single molecule imaging.. Optics Communications.
Coscia SM, Moore AS, Thompson CP, Tirrito CF, E Ostap M, Holzbaur ELF.  2024.  An interphase actin wave promotes mitochondrial content mixing and organelle homeostasis.. Nat Commun. 15(1):3793.