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2024
Tan HL, Yin L, Tan Y, Ivanov J, Plucinska K, Ilanges A, Herb BR, Wang P, Kosse C, Cohen P et al..  2024.  Leptin Activated Hypothalamic BNC2 Neurons Acutely Suppress Food Intake. bioRxiv.
Shroff H, Testa I, Jug F, Manley S.  2024.  Live-cell imaging powered by computation.. Nature Reviews Molecular Cell Biology.
Miyoshi T, Vishwasrao HD, Belyantseva IA, Sajeevadathan M, Ishibashi Y, Adadey SM, Harada N, Shroff H, Friedman TB.  2024.  Live-cell single-molecule fluorescence microscopy for protruding organelles reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of inner ear hair cells. bioRxiv.
2023
Nasu Y, Aggarwal A, Le GNT, Vo CTrang, Kambe Y, Wang X, Beinlich FRM, Lee ABomin, Ram TR, Wang F et al..  2023.  Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging.. Nature Communications. 14(1):6598.
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O’Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2023.  Large-scale brain-wide neural recording in nonhuman primates. bioRxiv.
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2023.  A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing. bioRxiv.
Sun W, Winnubst J, Natrajan M, Lai C, Kajikawa K, Michaelos M, Gattoni R, Stringer C, Flickinger D, Fitzgerald JE et al..  2023.  Learning produces a hippocampal cognitive map in the form of an orthogonalized state machine.. bioRxiv.
Nguyen C, Lei H-T, Lai LTung Faat, Gallenito MJ, Mu X, Matthies D, Gonen T.  2023.  Lipid flipping in the omega-3 fatty-acid transporter.. Nature Communications. 14(1):2571.
Sheridan A, Nguyen TM, Deb D, Lee W-CAllen, Saalfeld S, Turaga SC, Manor U, Funke J.  2023.  Local shape descriptors for neuron segmentation.. Nature Methods. 20(2):295-303.
Hinterer F, Schneider MC, Hubmer S, López-Martínez M, Ramlau R, Schütz GJ.  2023.  Localization of fixed dipoles at high precision by accounting for sample drift during illumination. Applied Physics Letters. 123(2)
Lai C, Kim D, Lustig B, Tanaka S, Barbarits B, Narayan L, Colonell J, Paulsen O, Lee AK, Harris TD.  2023.  Low-latency extracellular spike assignment for high-density electrodes at single-neuron resolution. bioRxiv.
Choi H, Liao Y-C, Yoon YJ, Grimm J, Lavis LD, Singer RH, Lippincott-Schwartz J.  2023.  Lysosomal release of amino acids at ER three-way junctions regulates transmembrane and secretory protein mRNA translation.. bioRxiv.
2022
Jacobs DS, Allen MC, Park J, Moghaddam B.  2022.  Learning of probabilistic punishment as a model of anxiety produces changes in action but not punisher encoding in the dmPFC and VTA.. eLife. 11
Darshan R, Rivkind A.  2022.  Learning to represent continuous variables in heterogeneous neural networks. Cell Reports. 39(1):110612.
Zhu X, Hager ER, Huyan C, Sgro AE.  2022.  Leveraging the model-experiment loop: Examples from cellular slime mold chemotaxis.. Exp Cell Res. 418(1):113218.
Preusser F, Neuschulz A, Junker JPhilipp, Rajewsky N, Preibisch S.  2022.  Long-term imaging reveals behavioral plasticity during C. elegans dauer exit. BMC Biology. 20(1):277.
2021
Samolis PD, Langley D, O'Reilly BM, Oo Z, Hilzenrat G, Erramilli S, Sgro AE, McArthur S, Sander MY.  2021.  Label-free imaging of fibroblast membrane interfaces and protein signatures with vibrational infrared photothermal and phase signals.. Biomed Opt Express. 12(1):303-319.
Rackley B, Seong C-S, Kiely E, Parker RE, Rupji M, Dwivedi B, Heddleston JM, Giang W, Anthony N, Chew T-L et al..  2021.  The level of oncogenic Ras determines the malignant transformation of Lkb1 mutant tissue in vivo.. Communications Biology. 4(1):142.
Stelzer EHK, Strobl F, Chang B-J, Preusser F, Preibisch S, McDole K, Fiolka R.  2021.  Light sheet fluorescence microscopy.. Nature Reviews Methods Primers. 1(1)
Ralhan I, Chang C-L, Lippincott-Schwartz J, Ioannou MS.  2021.  Lipid droplets in the nervous system.. Journal of Cell Biology. 220(7)
Lavis LD.  2021.  Live and Let Dye.. Biochemistry.
Sheridan A, Nguyen T, Deb D, Lee W-CAllen, Saalfeld S, Turaga S, Manor U, Funke J.  2021.  Local Shape Descriptors for Neuron Segmentation. bioRxiv.
Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N.  2021.  Locating Macromolecular Assemblies in Cells by 2D Template Matching with TEM.. eLife. 10
Jacquet Ade Rus, Tancredi JL, Lemire AL, DeSantis MC, Li W-P, O’Shea EK.  2021.  The LRRK2 G2019S mutation alters astrocyte-to-neuron communication via extracellular vesicles and induces neuron atrophy in a human iPSC-derived model of Parkinson’s disease. eLife.
Singh B, Maiti GP, Zhou X, Fazel-Najafabadi M, Bae S-C, Sun C, Terao C, Okada Y, Chua KHeng, Kochi Y et al..  2021.  Lupus susceptibility region containing CDKN1B rs34330 mechanistically influences expression and function of multiple target genes, also linked to proliferation and apoptosis.. Arthritis Rheumatology. 73(12):2303-13.