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2024
Yip MC, Gonzalez MM, Lewallen CF, Landry CR, Kolb I, Yang B, Stoy WM, Fong M-fai, Rowan MJM, Boyden ES et al..  2024.  Patch-walking: Coordinated multi-pipette patch clamp for efficiently finding synaptic connections. bioRxiv.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.
Dai B, Yang J, Shroff H, La Riviere P.  2024.  Prediction of Cellular Identities from Trajectory and Cell Fate Information. arXiv.
2023
Peng X, Clements J, Jiang Z, Preibisch S, Li J.  2023.  PEELing: an integrated and user-centric platform for cell-surface proteomics analysis. bioRxiv.
Ott CM, Constable S, Nguyen TM, White K, Lee W-CAllen, Lippincott-Schwartz J, Mukhopadhyay S.  2023.  Permanent deconstruction of intracellular primary cilia in differentiating granule cell neurons.. bioRxiv.
Johnson C, Guo M, Schneider MC, Su Y, Khuon S, Reiser N, Wu Y, La Riviere P, Shroff H.  2023.  Phase diversity-based wavefront sensing for fluorescence microscopy.. bioRxiv.
Bonello TT, Cai D, Fletcher GC, Wiengartner K, Pengilly V, Lange KS, Liu Z, Lippincott-Schwartz J, Kavran JM, Thompson BJ.  2023.  Phase separation of Hippo signalling complexes.. EMBO Journal. 42(6):e112863.
Birman D, Yang KJ, West SJ, Karsh B, Browning Y, Laboratory theInternatio, Siegle JH, Steinmetz NA.  2023.  Pinpoint: trajectory planning for multi-probe electrophysiology and injections in an interactive web-based 3D environment. bioRxiv.
Guardia CM, Kane E, Tebo AG, Sanders AAWM, Kaya D, Grogan KE.  2023.  The power of peer networking for improving STEM faculty job applications: a successful pilot programme.. Proceedings. Biological Sciences. 290(1997):20230124.
Covert I, Gala R, Wang T, Svoboda K, Sümbül U, Lee S-I.  2023.  Predictive and robust gene selection for spatial transcriptomics.. Nature Communications. 14(1):2091.
Safaie M, Chang JC, Park J, Miller LE, Dudman JT, Perich MG, Gallego JA.  2023.  Preserved neural dynamics across animals performing similar behaviour.. Nature.
2022
Li Q, Zhao W, Liu S, Zhao Y, Pan W, Wang X, Liu Z, Xu Y.  2022.  Partial resistance to citalopram in a Wistar-Kyoto rat model of depression: An evaluation using resting-state functional MRI and graph analysis.. Journal of Psychiatric Research. 151:242-251.
Charlton JA, Młynarski WF, Bai YH, Hermundstad AM, Goris RLT.  2022.  Perceptual decisions exhibit hallmarks of dynamic Bayesian inference. bioRxiv.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J. Bae A, Mitchell E, Mu S, Trautman ET et al..  2022.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. bioRxiv.
Wong V.C, Houlihan P.R., Liu H., Walpita D., DeSantis M.C., Liu Z., O’Shea E.K.  2022.  Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking.. bioRxiv.
Namiki S, Ros IG, Morrow C, Rowell WJ, Card GM, Korff W, Dickinson MH.  2022.  A population of descending neurons that regulates the flight motor of Drosophila.. Current Biology. 32(5):1189-1196.
Tarazi S, Aguilera-Castrejon A, Joubran C, Ghanem N, Ashouokhi S, Roncato F, Wildschutz E, Haddad M, Oldak B, Gomez-Cesar E et al..  2022.  Post-gastrulation synthetic embryos generated ex utero from mouse naive ESCs. Cell. 185:3290-3306.e25.
Hobson CM, Guo M, Vishwasrao HD, Wu Y, Shroff H, Chew T-L.  2022.  Practical considerations for quantitative light sheet fluorescence microscopy.. Nature Methods. 19(12):1538-49.
Mondal C, Gacha-Garay MJ, Larkin KA, Adikes RC, Di Martino JS, Chien C-C, Fraser M, Eni-Aganga I, Agullo-Pascual E, Cialowicz K et al..  2022.  A proliferative to invasive switch is mediated by srGAP1 downregulation through the activation of TGF-β2 signaling.. Cell Reports. 40(12):111358.
Leemann S, Babalian A, Girard F, Davis F, Celio MR.  2022.  The PV2 cluster of parvalbumin neurons in the murine periaqueductal gray: connections and gene expression.. Brain Structure and Function. 227(6):2049-72.
2021
Jia J, He L, Yang J, Shuai Y, Yang J, Wu Y, Liu X, Chen T, Wang G, Wang X et al..  2021.  A pair of dopamine neurons mediate chronic stress signals to induce learning deficit in Drosophila melanogaster.. Proceedings of the National Academy of Sciences of the U. S. A.. 118(42)
Huisman M, Hammer M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  A perspective on Microscopy Metadata: data provenance and quality control. arXiv.
Porter LL, Kim AK, Looger LL, Majumdar A, Starich M.  2021.  Pervasive fold switching in a ubiquitous protein superfamily.. bioRxiv.
Ohta M, Zhao Z, Wu D, Wang S, Harrison JL, J. Gómez-Cavazos S, Desai A, Oegema KF.  2021.  Polo-like kinase 1 independently controls microtubule-nucleating capacity and size of the centrosome. Journal of Cell Biology. 220
Guardia CM, Kane E, Tebo AG, Sanders AAWM, Kaya D, Grogan KE.  2021.  The power of peer networking for improving STEM faculty job applications: a successful pilot program. bioRxiv.