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Clayton Lab

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Clayton Lab
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Clayton Lab
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September 2008 - February 2014

Our laboratory has a long-standing and continuing interest in this extrachromosomal genome, mainly in the areas of mtDNA replication and transcription.

Mitochondria are thought to have evolved from ancient prokaryotes living inside other cells as endosymbionts. One vestige of this evolutionary history is that the mitochondrial organelle still maintains and expresses its own DNA (mtDNA).


MtDNA encodes essential proteins involved in oxidative phosphorylation, and the production of ATP is a well-known function of the mitochondria. Therefore, mtDNA expression defects are most commonly associated with bioenergetic deficiencies. However, ATP production is not the only function of the mitochondria.

The mitochondria are also involved in a variety of signaling pathways, including apoptosis, survival, growth, development, and immune responses, among others. The details of many of these signaling pathways remain obscure. Nonetheless, it appears that the assimilation of a symbiotic prokaryote through evolutionary time has involved varied and unique mechanisms of communication between the mitochondria and other intracellular and extracellular compartments.

Some of our current research interests are at the interface between the molecular dynamics of mtDNA and extramitochondrial signaling events. MtDNA is organized within "nucleoids," which are loosely packaged bundles of mtDNA, RNA, and various proteins. Molecular signals to and from the mitochondrial genome are mediated by these various components of the nucleoid. Most of the questions in this area remain fundamental. Is the nucleoid composition homogenous, or is it tailored to local needs within a cell? Which signals are directly mediated by the nucleoid components? What subset of nucleoids is associated with the inner mitochondrial membrane or with contiguous cytoskeletal structures, where they might be better positioned for intracellular communication? We are using various fluorescently tagged proteins and the newly developed PALM imaging system in this effort.