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7 ResultsShowing 1-7 of 7 results
A spherical harmonics framework for whole-embryo mechanics modeling
A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
Efficient processing and analysis of large-scale light-sheet microscopy data
Light-sheet microscopy is a powerful method for imaging the development and function of complex biological systems at high spatiotemporal resolution and over long time scales. Such experiments...
Fast and robust optical flow for time-lapse microscopy using super-voxels
Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and...
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
High-throughput multiview image registration for SiMView microscopy
High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
Image processing and analysis of whole-brain functional recordings
Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
Whole-animal functional and developmental imaging with isotropic spatial resolution
Whole-animal functional and developmental imaging with isotropic spatial resolution Imaging fast cellular dynamics across large specimens requires high resolution in all dimensions,...