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28 Results

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    Tools
    GALA
    Powerful Software Tools for Nanometer-Resolution EM Neuro-image Large Stacks' Segmentation Image segmentation, a fundamental problem in computer vision, concerns the division of...
    Tools
    High-throughput multiview image registration for SiMView microscopy
    High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
    Tools
    Image processing and analysis of whole-brain functional recordings
    Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
    Tools
    JAABA®
    Janelia Automatic Animal Behavior Annotator (JAABA®) Video of animal movement is a valuable measure of their behavior. However, translating a video into interpretable results if done...
    Tools
    Lattice Light Deconvolution Software - cudaDeconv
    Software Description This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light-sheet microscope developed by Eric Betzig's group at HHMI'...
    Tools
    Modular Visual Display System
    About the Innovation This project documents the hardware and software of an updated version of the Panels, a modular display system typically used for insect vision research. This is an...
    Tools
    Neuroproof
    Toolkit for graph-based image segmentation and analysis Neuroproof is a suite of software applications focused on electron microscopy image reconstruction.  It also provides an easy-...
    Tools
    Serial Section Alignment
    Serial Section Alignment Configure Briefly, serial section tomography entails slicing a block of tissue into...
    Tools
    ShuTu Open-Source Software for Neuron Reconstruction
    ShuTu Configure ShuTu (Chinese for “dendrite”) is a software platform for semi-automated reconstruction of neuronal morphology. It is designed for neurons stained following patch-...
    Tools
    Smartscope
    Microsurgery, Bleaching, Stimulation, and Measurement by way of 3D Image Guidance This new 3D microscopy imaging and post-imaging instrument guidance allows researchers to capture a 3D...