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Abrahamsson, S., J. Chen, B. Hajj, S. Stallinga, A. Y. Katsov, J. Wisniewski, G. Mizuguchi, P. Soule, F. Mueller, C. Dugast Darzacq, X. Darzacq, C. Wu, C. I. Bargmann, D. A. Agard, M. Dahan and M. G. Gustafsson (2013). "Fast multicolor 3D imaging using aberration-corrected multifocus microscopy." Nat Methods 10(1): 60-63.

Adelman, K. and J. T. Lis (2012). "Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans." Nat Rev Genet 13(10): 720-731.

Barbieri, M., J. Fraser, L. M. Lavitas, M. Chotalia, J. Dostie, A. Pombo and M. Nicodemi (2013). "A polymer model explains the complexity of large-scale chromatin folding." Nucleus 4(4): 267-273.

Barbieri, M., A. Scialdone, A. Piccolo, A. M. Chiariello, C. di Lanno, A. Prisco, A. Pombo and M. Nicodemi (2013). "Polymer models of chromatin organization." Front Genet 4: 113.

Cavalli, G. and T. Misteli (2013). "Functional implications of genome topology." Nat Struct Mol Biol 20(3): 290-299.

Chen, J., Z. Zhang, L. Li, B. C. Chen, A. Revyakin, B. Hajj, W. Legant, M. Dahan, T. Lionnet, E. Betzig, R. Tjian and Z. Liu (2014). "Single-molecule dynamics of enhanceosome assembly in embryonic stem cells." Cell 156(6): 1274-1285.

Cisse, II, I. Izeddin, S. Z. Causse, L. Boudarene, A. Senecal, L. Muresan, C. Dugast-Darzacq, B. Hajj, M. Dahan and X. Darzacq (2013). "Real-time dynamics of RNA polymerase II clustering in live human cells." Science 341(6146): 664-667.

Consortium, E. P., B. E. Bernstein, E. Birney, I. Dunham, E. D. Green, C. Gunter and M. Snyder (2012). "An integrated encyclopedia of DNA elements in the human genome." Nature 489(7414): 57-74.

Dekker, J., M. A. Marti-Renom and L. A. Mirny (2013). "Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data." Nat Rev Genet 14(6): 390-403.

El Beheiry, M. and M. Dahan (2013). "ViSP: representing single-particle localizations in three dimensions." Nat Methods 10(8): 689-690.

Goodrich, J. A. and R. Tjian (2010). "Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation." Nat Rev Genet 11(8): 549-558.

Grimm, J. B., B. P. English, J. Chen, J. P. Slaughter, Z. Zhang, A. Revyakin, R. Patel, J. J. Macklin and D. Normanno (2015). "A general method to improve fluorophores for live-cell and single-molecule microscopy."

Grimm, J. B., B. P. English, J. Chen, J. P. Slaughter, Z. Zhang, A. Revyakin, R. Patel, J. J. Macklin, D. Normanno, R. H. Singer, T. Lionnet and L. D. Lavis (2015). "A general method to improve fluorophores for live-cell and single-molecule microscopy." Nat Methods 12(3): 244-250.

Hajj, B., J. Wisniewski, M. El Beheiry, J. Chen, A. Revyakin, C. Wu and M. Dahan (2014). "Whole-cell, multicolor superresolution imaging using volumetric multifocus microscopy." Proc Natl Acad Sci U S A 111(49): 17480-17485.

Izeddin, I., V. Recamier, L. Bosanac, Cisse, II, L. Boudarene, C. Dugast-Darzacq, F. Proux, O. Benichou, R. Voituriez, O. Bensaude, M. Dahan and X. Darzacq (2014). "Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus." Elife 3.

Juven-Gershon, T. and J. T. Kadonaga (2010). "Regulation of gene expression via the core promoter and the basal transcriptional machinery." Dev Biol 339(2): 225-229.

Lagha, M., J. P. Bothma and M. Levine (2012). "Mechanisms of transcriptional precision in animal development." Trends Genet 28(8): 409-416.

Levine, M., C. Cattoglio and R. Tjian (2014). "Looping Back to Leap Forward: Transcription Enters a New Era." Cell 157(1): 13-25.

Lionnet, T., K. Czaplinski, X. Darzacq, Y. Shav-Tal, A. L. Wells, J. A. Chao, H. Y. Park, V. de Turris, M. Lopez-Jones and R. H. Singer (2011). "A transgenic mouse for in vivo detection of endogenous labeled mRNA." Nat Methods 8(2): 165-170.

Lionnet, T. and R. H. Singer (2012). "Transcription goes digital." EMBO Rep 13(4): 313-321.

Ong, C. T. and V. G. Corces (2011). "Enhancer function: new insights into the regulation of tissue-specific gene expression." Nat Rev Genet 12(4): 283-293.

Park, H. Y., H. Lim, Y. J. Yoon, A. Follenzi, C. Nwokafor, M. Lopez-Jones, X. Meng and R. H. Singer (2014). "Visualization of dynamics of single endogenous mRNA labeled in live mouse." Science 343(6169): 422-424.

Recamier, V., I. Izeddin, L. Bosanac, M. Dahan, F. Proux and X. Darzacq (2014). "Single cell correlation fractal dimension of chromatin: A framework to interpret 3D single molecule super-resolution." Nucleus 5(1).

Revyakin, A., Z. Zhang, R. A. Coleman, Y. Li, C. Inouye, J. K. Lucas, S. R. Park, S. Chu and R. Tjian (2012). "Transcription initiation by human RNA polymerase II visualized at single-molecule resolution." Genes Dev 26(15): 1691-1702.

Stasevich, T. J., Y. Hayashi-Takanaka, Y. Sato, K. Maehara, Y. Ohkawa, K. Sakata-Sogawa, M. Tokunaga, T. Nagase, N. Nozaki, J. G. McNally and H. Kimura (2014). "Regulation of RNA polymerase II activation by histone acetylation in single living cells." Nature 516(7530): 272-275.

Wisniewski, J., B. Hajj, J. Chen, G. Mizuguchi, H. Xiao, D. Wei, M. Dahan and C. Wu (2014). "Imaging the fate of histone Cse4 reveals de novo replacement in S phase and subsequent stable residence at centromeres." Elife 3: e02203.

Zhang, Z., A. Revyakin, J. B. Grimm, L. D. Lavis and R. Tjian (2014). "Single-molecule tracking of the transcription cycle by sub-second RNA detection." Elife 3: e01775.