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2025
Cheong HSj, Eichler K, Stürner T, Asinof SK, Champion AS, Marin EC, Oram TB, Sumathipala M, Venkatasubramanian L, Namiki S et al..  2025.  Transforming descending input into motor output: An analysis of the Drosophila Male Adult Nerve Cord connectome. eLife.
Yilmaz A, Gurhan G, Comar M-Y, Viukov S, Serfaty I, Gayretli M, Golenchenko S, Lokshtanov D, Ashouokhi S, Polanco A et al..  2025.  Transgene-free generation of mouse post-gastrulation whole embryo models solely from naive ESCs and iPSCs.. Cell Stem Cell.
Yilmaz A, Gurhan G, Comar M-Y, Viukov S, Serfaty I, Gayretli M, Golenchenko S, Lokshtanov D, Ashouokhi S, Polanco A et al..  2025.  Transgene-free generation of mouse post-gastrulation whole embryo models solely from naive ESCs and iPSCs.. Cell Stem Cell.
Yilmaz A, Gurhan G, Comar M-Y, Viukov S, Serfaty I, Gayretli M, Golenchenko S, Lokshtanov D, Ashouokhi S, Polanco A et al..  2025.  Transgene-free generation of mouse post-gastrulation whole embryo models solely from naive ESCs and iPSCs.. Cell Stem Cell.
Zhong L, Baptista S, Gattoni R, Arnold J, Flickinger D, Stringer C, Pachitariu M.  2025.  Unsupervised pretraining in biological neural networks. Nature.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Weigel AV, Team TCellMap, H. Pasolli A, C. Xu S, Shtengel G et al..  2025.  Vimentin filament transport and organization revealed by single-particle tracking and 3D FIB-SEM. Journal of Cell Biology. 224:e202406054.
Kawashima T, Wei Z, Haruvi R, Shainer I, Narayan S, Baier H, Ahrens MB.  2025.  Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning. Neuron.
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2025.  Volumetric imaging of the 3D orientation of cellular structures with a polarized fluorescence light-sheet microscope.. Proc Natl Acad Sci . 122(8):e2406679122.
Chen W, James B, Ruetten VMS, Banala S, Wei Z, Fleishman G, Rubinov M, Fishman MC, Engert F, Lavis LD et al..  2025.  Whole-brain, all-optical interrogation of neuronal dynamics underlying gut interoception in zebrafish. bioRxiv.
2024
Vijayakumaran A, Godbehere C, Abuammar A, Breusegem SY, Hurst LR, Morone N, Llodra J, Dalbay MT, Tanvir NM, MacLellan-Gibson K. et al..  2024.  3D nanoscale architecture of the respiratory epithelium reveals motile cilia-rootlets-mitochondria axis of communication. bioRxiv.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Kraitzick AZ, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ et al..  2024.  All-optical reporting of inhibitory receptor driving force in the nervous system. Nat Commun. 15(1):8913.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Kraitzick AZ, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ et al..  2024.  All-optical reporting of inhibitory receptor driving force in the nervous system. Nat Commun. 15(1):8913.
Updegrove TB, Delerue T, Anantharaman V., Cho H, Chan C, Nipper T, Choo-Wosoba H, Jenkins L, Zhang L, Su Y et al..  2024.  Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity. Sci Adv. 10(42):eadq0791.
Updegrove TB, Delerue T, Anantharaman V., Cho H, Chan C, Nipper T, Choo-Wosoba H, Jenkins L, Zhang L, Su Y et al..  2024.  Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity. Sci Adv. 10(42):eadq0791.
Barrero DJ, Wijeratne SS, Zhao X, Cunningham GF, Yan R, Nelson CR, Arimura Y, Funabiki H, Asbury CL, Yu Z et al..  2024.  Architecture and flexibility of native kinetochores revealed by structural studies utilizing a thermophilic yeast. Curr Biol. S0960-9822(24):00939-4.
Barrero DJ, Wijeratne SS, Zhao X, Cunningham GF, Yan R, Nelson CR, Arimura Y, Funabiki H, Asbury CL, Yu Z et al..  2024.  Architecture and flexibility of native kinetochores revealed by structural studies utilizing a thermophilic yeast. Curr Biol. S0960-9822(24):00939-4.
Athreya A, Xie L, Tjian R, Zhang B, Liu ZJ.  2024.  Assessing the impact of Brd2 depletion on chromatin compartmentalization. bioRxiv.
Ahrens MB, Khakh BS, Poskanzer KE.  2024.  Astrocyte Calcium Signaling. Cold Spring Harb Perspect Biol.
Lee RM, Eisenman LR, Khuon S, Aaron JS, Chew T-L.  2024.  Believing is seeing - the deceptive influence of bias in quantitative microscopy.. Journal of Cell Science. 137(1)
Aggarwal A, Sunil S, Bendifallah I, Moon M, Drobizhev M, Zarowny L, Zheng J, Wu S-Y, Lohman AW, Tebo AG et al..  2024.  Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption. Neurophotonics.
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a