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2017
Hart C, Abuladel N, Bee M, Kreider MC, CVitan AC, Esson MM, Farag A, Ibeh T, Kalivas EN, Larco D-M et al..  2017.  Protein-templated gold nanoparticle synthesis: protein organization, controlled gold sequestration, and unexpected reaction products.. Dalton Transactions (Cambridge, England : 2003). 46(47):16465-16473.
Shinomiya K, Ito M.  2017.  Recent progress in the 3D reconstruction of Drosophila neural circuits.. Decoding Neural Circuit Structure and Function. :63-89.
Ren Q, Yang C-P, Liu Z, Sugino K, Mok K, He Y, Ito M, Nern A, Otsuna H, Lee T.  2017.  Stem cell-intrinsic, seven-up-triggered temporal factor gradients diversify intermediate neural progenitors.. Current Biology : CB. 27(9):1303-13.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Stochastic protein labeling enables long-term single molecule observation in vivo.. bioRxiv.
Tsubouchi A, Yano T, Yokoyama TK, Murtin C, Otsuna H, Ito K.  2017.  Topological and modality-specific representation of somatosensory information in the fly brain.. Science (New York, N.Y.). 358(6363):615-623.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling.. Proceedings of the National Academy of Sciences of the United States of America. 115(2):343-8.
2018
Otsuna H, Ito M, Kawase T.  2018.  Color depth MIP mask search: a new tool to expedite Split-GAL4 creation.. bioRxiv.
Kunduri G, Turner-Evans D, Konya Y, Izumi Y, Nagashima K, Lockett S, Holthuis J, Bamba T, Acharya U, Acharya JK.  2018.  Defective cortex glia plasma membrane structure underlies light-induced epilepsy in mutants.. Proceedings of the National Academy of Sciences of the United States of America. 115(38):E8919-28.
Paez-Segala MG, Wang Y, Iyer N, Li W-P, Rivlin PK, Looger LL.  2018.  Development and Applications of Fluorescent Proteins for Correlative Light and Electron Microscopy. Microscopy and Microanalysis. 24(S1):2318-2319.
Inagaki HK, Inagaki M, Romani S, Svoboda K.  2018.  Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(17):4163-85.
Inagaki HK, Inagaki M, Romani S, Svoboda K.  2018.  Low-dimensional and monotonic preparatory activity in mouse anterior lateral motor cortex.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(17):4163-85.
Condon ND, Heddleston JM, Chew T-L, Luo L, McPherson PS, Ioannou MS, Hodgson L, Stow JL, Wall AA.  2018.  Macropinosome formation by tent pole ruffling in macrophages.. The Journal of Cell Biology. 217(11):3873-85.
Taylor AB, Ioannou MS, Aaron J, Chew T-L.  2018.  Model-free quantification and visualization of colocalization in fluorescence images.. Cytometry. Part A : the journal of the International Society for Analytical Cytology.
Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow P-M, Zietz M, Hoffman MM et al..  2018.  Opportunities and obstacles for deep learning in biology and medicine.. Journal of The Royal Society Interface.
Stubb A, Guzmán C, Närvä E, Aaron J, Chew T-L, Saari M, Miihkinen M, Jacquemet G, Ivaska J.  2018.  Superresolution architecture of pluripotency guarding adhesions.. bioRxiv.
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner GW, Nern A, Colonell J, Malkesman O, Saalfeld S.  2018.  An unbiased template of the Drosophila brain and ventral nerve cord.. bioRxiv.
Arkhipov A, Gouwens NW, Billeh YN, Gratiy S, Iyer R, Wei Z, Xu Z, Abbasi-Asl R, Berg J, Buice M et al..  2018.  Visual physiology of the layer 4 cortical circuit in silico.. PLoS Computational Biology. 14(11):e1006535.
2019
Inagaki HK, Fontolan L, Romani S, Svoboda K.  2019.  Discrete attractor dynamics underlies persistent activity in the frontal cortex.. Nature. 566(7743):212-7.
Im DJiwoong, Prakhya S, Yan J, Turaga SC, Branson K.  2019.  Importance Weighted Adversarial Variational Autoencoders for Spike Inference from Calcium Imaging Data. CoRR. abs/1906.03214
Huang J, Isidori A, Marconi L, Mischiati M, Sontag E, Wonham WM.  2019.  Internal models in control, biology and neuroscience.. 2018 IEEE Conference on Decision and Control (CDC).
Dolan M-J, Frechter S, Bates AShakeel, Dan C, Huoviala P, Roberts RJv, Schlegel P, Dhawan S, Tabano R, Dionne H et al..  2019.  Neurogenetic dissection of the lateral horn reveals major outputs, diverse behavioural functions, and interactions with the mushroom body.. Elife. 8
Engelhard B, Darshan R, Ozeri-Engelhard N, Israel Z, Werner-Reiss U, Hansel D, Bergman H, Vaadia E.  2019.  Neuronal activity and learning in local cortical networks are modulated by the action-perception state. bioRxiv.
Ioannou MS, Jackson J, Sheu S-H, Chang C-L, Weigel AV, Liu H, H Pasolli A, C Xu S, Pang S, Matthies D et al..  2019.  Neuron-astrocyte metabolic coupling protects against activity-induced fatty acid toxicity.. Cell. 177(6):1522-1535.e14.
Ioannou MS, Liu Z, Lippincott-Schwartz J.  2019.  A neuron-glia Co-culture system for studying intercellular lipid transport.. Curr Protoc Cell Biol. 84(1):e95.
Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S.  2019.  An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability.. Nature Communications. 10(1):216.