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2025
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Guan Y, Yu Y, Gao SMax, Ding L, Zhao Q, Wang M.  2025.  Cross-Tissue Coordination between SLC Nucleoside Transporters Regulates Reproduction in Caenorhabditis elegans. PLoS Genet.
Chen Y, Yserentant K, Hong K, Kuang Y, Bhowmick A, Charles-Orszag A, Lord SJ, Lu L, Hou K, Mann SI et al..  2025.  De novo designed bright, hyperstable rhodamine binders for fluorescence microscopy. bioRxiv.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mi X, Chen ABo-Yuan, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim J-X, Ruetten VMS et al..  2025.  Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals.. Cell.
Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie ME, MacLennan BJ, Hagihara KM et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. bioRxiv.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Zheng Y, Cai R, Wang K, Zhang J, Zhuo Y, Dong H, Zhang Y, Wang Y, Deng F, Ji E et al..  2025.  In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors. Science.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..  2025.  Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
Banuelos A, Baez M, Zhang A, Yılmaz L, Kasberg W, Volk R, Georgeos N, Koren-Sedova E, Le U, Burden AT et al..  2025.  Macrophages release neuraminidase and cleaved calreticulin for programmed cell removal.. Proc Natl Acad Sci U S A. 122(21):e2426644122.
Patel TP, Jun JYun, Seo AY, Levi NJ, Elizondo DM, Chen J, Wong AM, Tugarinov N, Altman EK, Gehle DB et al..  2025.  Melanocortin 3 receptor regulates hepatic autophagy and systemic adiposity.. Nat Commun. 16(1):1690.
Rosenthal JS, Zhang D, Yin J, Long C, Yang G, Li Y, Lu Z, Li W-P, Yu Z, Li J et al..  2025.  Molecular organization of central cholinergic synapses.. Proc Natl Acad Sci U S A. 122(17):e2422173122.
Rosenthal JS, Zhang D, Yin J, Long C, Yang G, Li Y, Lu Z, Li W-P, Yu Z, Li J et al..  2025.  Molecular organization of central cholinergic synapses.. Proc Natl Acad Sci U S A. 122(17):e2422173122.
Rosenthal JS, Zhang D, Yin J, Long C, Yang G, Li Y, Lu Z, Li W-P, Yu Z, Li J et al..  2025.  Molecular organization of central cholinergic synapses.. Proc Natl Acad Sci U S A. 122(17):e2422173122.
Rosenthal JS, Zhang D, Yin J, Long C, Yang G, Li Y, Lu Z, Li W-P, Yu Z, Li J et al..  2025.  Molecular organization of central cholinergic synapses.. Proc Natl Acad Sci U S A. 122(17):e2422173122.
Fu T-M, Liu G, Milkie DE, Ruan X, Görlitz F, Shi Y, Ferro V, Divekar NS, Wang W, York HM et al..  2025.  A Multimodal Adaptive Optical Microscope For In Vivo Imaging from Molecules to Organisms. bioRxiv.
Yacoub M, Iqbal F, Khan Z, Syeda A, Lijnse T, Syed NI.  2025.  Neuronal growth patterns and synapse formation are mediated by distinct activity-dependent mechanisms.. Sci Rep. 15(1):17338.
Lakunina A, Socha KZ, Ladd A, Bowen AJ, Chen S, Colonell J, Doshi A, Karsh B, Krumin M, Kulik P et al..  2025.  Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics. bioRxiv.
Zhou H, Hutchings J, Shiozaki M, Zhao X, Doolittle LK, Yang S, Yan R, Jean N, Riggi M, Yu Z et al..  2025.  Quantitative spatial analysis of chromatin biomolecular condensates using cryoelectron tomography.. Proc Natl Acad Sci U S A. 122(19):e2426449122.