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2025
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie ME, MacLennan BJ, Hagihara KM et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. bioRxiv.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..  2025.  Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
Close K, He Y, Jeter J, Ihrke G, Eddison M.  2025.  Multiplex Detection of Gene Expression in the Intact Drosophila Brain Using Expansion-Assisted Iterative Fluorescence In Situ Hybridization.. J Vis Exp. (219)
Yacoub M, Iqbal F, Khan Z, Syeda A, Lijnse T, Syed NI.  2025.  Neuronal growth patterns and synapse formation are mediated by distinct activity-dependent mechanisms.. Sci Rep. 15(1):17338.
Preibisch S, Innerberger M, León-Periñán D, Karaiskos N, Rajewsky N.  2025.  Scalable image-based visualization and alignment of spatial transcriptomics datasets. Cell Syst.
Ehrhardt E, Whitehead SC, Namiki S, Minegishi R, Siwanowicz I, Feng K, Otsuna H, Team FLProject, Meissner GW, Stern D et al..  2025.  Single-cell type analysis of wing premotor circuits in the ventral nerve cord of Drosophila melanogaster. eLife.
Meissner GW, Vannan A, Jeter J, Close K, Depasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2025.  A split-GAL4 driver line resource for Drosophila neuron types.
Meissner GW, Vannan A, Jeter J, Close K, Depasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2025.  A split-GAL4 driver line resource for Drosophila neuron types.
Meissner GW, Vannan A, Jeter J, Close K, Depasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2025.  A split-GAL4 driver line resource for Drosophila neuron types.
Meissner GW, Vannan A, Jeter J, Close K, Depasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2025.  A split-GAL4 driver line resource for Drosophila neuron types.
Rogina B, Anderson R, Lebrasseur N, Curan S, Yousefzadeh MJ, Ghosh B, Duque G, Howlett S, Austad S, Demuth I et al..  2025.  Symposia Report of The Annual Biological Sciences Section Meeting of the Gerontological Society of America 2023, Tampa, Florida.. J Gerontol A Biol Sci Med Sci.
Rogina B, Anderson R, Lebrasseur N, Curan S, Yousefzadeh MJ, Ghosh B, Duque G, Howlett S, Austad S, Demuth I et al..  2025.  Symposia Report of The Annual Biological Sciences Section Meeting of the Gerontological Society of America 2023, Tampa, Florida.. J Gerontol A Biol Sci Med Sci.
Scholz-Carson E., Iyer A.R, Ewer J., Fernandez MP.  2025.  Targets of Circadian Clock Neurons Influence Core Clock Parameters. bioRxiv.
2024
De Niz M, García REscobedo, Ramirez CTerán, Pakowski Y, Abonza Y, Bialy N, Orr VL, Olivera A, Abonza V, Alleva K et al..  2024.  Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy. n/a
Ackerman D, Avetissian E, Bleck CKE, Bogovic JA, Innerberger M, Korff W, Li W-P, Lu Z, Petruncio A, Preibisch S et al..  2024.  Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning. bioRxiv.
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Park P, J. Wong-Campos D, Itkis D, Lee BHun, Qi Y, Davis HC, Grimm JB, Plutkis SE, Lavis L, Cohen AEzra.  2024.  Dendritic voltage imaging maps the biophysical basis of plateau potentials in the hippocampus. bioRxiv.
Xia M, Lu J, Lan J, Teng T, Shiao R, Sun H, Jin Z, Liu X, Wang J, Wu H et al..  2024.  Elevated IL-22 as a result of stress-induced gut leakage suppresses septal neuron activation to ameliorate anxiety-like behavior.. Immunity. :S1074-7613(24)00523-5.
Kumari R, Ven K, Chastney M, Kokate SB, Peränen J, Aaron J, Kogan K, Almeida-Souza L, Kremneva E, Poincloux R et al..  2024.  Focal adhesions contain three specialized actin nanoscale layers. Nature Communications. 15(1)
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Peale DR, Hess H, Lee P.R, Cardona A, Bock DD, Schneider-Mizell C, Fetter RD, Lee W-P, Robinson CG, Iyer N et al..  2024.  iTome Volumetric Serial Sectioning Apparatus for TEM. bioRxiv.