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2017
Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK et al..  2017.  Multicut brings automated neurite segmentation closer to human performance.. Nature Methods. 14(2):101-102.
Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L.  2017.  Multi-scale approaches for high-speed imaging and analysis of large neural populations.. PLoS Computational Biology. 13(8):e1005685.
Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L.  2017.  Multi-scale approaches for high-speed imaging and analysis of large neural populations.. PLoS Computational Biology. 13(8):e1005685.
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
Kieffer-Kwon K-R, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P et al..  2017.  Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.. Molecular Cell. 67(4):566-78.
Kieffer-Kwon K-R, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P et al..  2017.  Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.. Molecular Cell. 67(4):566-78.
Richie CT, Whitaker LR, Whitaker KW, Necarsulmer J, Baldwin HA, Zhang Y, Fortuno L, Hinkle JJ, Koivula P, Henderson MJ et al..  2017.  Near-infrared fluorescent protein iRFP713 as a reporter protein for optogenetic vectors, a transgenic Cre-reporter rat, and other neuronal studies.. Journal of Neuroscience Methods. 284:1-14.
Almeida-Carvalho MJ, Berh D, Braun A, Chen Y-chun, Eichler K, Eschbach C, Fritsch PMJ, Gerber B, Hoyer N, Jiang X et al..  2017.  The Ol1mpiad: concordance of behavioural faculties of stage 1 and stage 3 Drosophila larvae.. The Journal of Experimental Biology. 220(Pt 13):2452-2475.
Almeida-Carvalho MJ, Berh D, Braun A, Chen Y-chun, Eichler K, Eschbach C, Fritsch PMJ, Gerber B, Hoyer N, Jiang X et al..  2017.  The Ol1mpiad: concordance of behavioural faculties of stage 1 and stage 3 Drosophila larvae.. The Journal of Experimental Biology. 220(Pt 13):2452-2475.
Almeida-Carvalho MJ, Berh D, Braun A, Chen Y-chun, Eichler K, Eschbach C, Fritsch PMJ, Gerber B, Hoyer N, Jiang X et al..  2017.  The Ol1mpiad: concordance of behavioural faculties of stage 1 and stage 3 Drosophila larvae.. The Journal of Experimental Biology. 220(Pt 13):2452-2475.
Zhang W, Lohman AW, Zhuravlova Y, Lu X, Wiens MD, Hoi H, Yaganoglu S, Mohr MA, Kitova EN, Klassen JS et al..  2017.  Optogenetic control with a photocleavable protein, PhoCl.. Nature Methods. 14(4):391-394.
Presman DM, Ball DA, Paakinaho V, Grimm JB, Lavis LD, Karpova TS, Hager GL.  2017.  Quantifying transcription factor binding dynamics at the single-molecule level in live cells.. Methods (San Diego, Calif.).
Presman DM, Ball DA, Paakinaho V, Grimm JB, Lavis LD, Karpova TS, Hager GL.  2017.  Quantifying transcription factor binding dynamics at the single-molecule level in live cells.. Methods (San Diego, Calif.).
Mohr MAlexander, Kobitski AYu, Sabater LRullan, Nienhaus K, Obara CJohn, Lippincott-Schwartz J, Nienhaus GUlrich, Pantazis P.  2017.  Rational engineering of photoconvertible fluorescent proteins for dual-color fluorescence nanoscopy enabled by a triplet-state mechanism of primed conversion.. Angewandte Chemie (International ed. in English). 56(38):11628-33.
Pachitariu M, Stringer C, Harris KD.  2017.  Robustness of spike deconvolution for calcium imaging of neural spiking.. bioRxiv. :156786.
Priebe CE, Park Y, Tang M, Athreya A, Lyzinski V, Vogelstein JT, Qin Y, Cocanougher B, Eichler K, Zlatic M et al..  2017.  Semiparametric spectral modeling of the Drosophila connectome.. arXiv. :1705.03297.
Priebe CE, Park Y, Tang M, Athreya A, Lyzinski V, Vogelstein JT, Qin Y, Cocanougher B, Eichler K, Zlatic M et al..  2017.  Semiparametric spectral modeling of the Drosophila connectome.. arXiv. :1705.03297.
Martineau M, Somasundaram A, Grimm JB, Gruber TD, Choquet D, Taraska JW, Lavis LD, Perrais D.  2017.  Semisynthetic fluorescent pH sensors for imaging exocytosis and endocytosis.. Nature Communications. 8(1):1412.
Charles AS, Song A, Koay SAnn, Tank DW, Pillow JW.  2017.  Stochastic filtering of two-photon imaging using reweighted ℓ1. 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Stochastic protein labeling enables long-term single molecule observation in vivo.. bioRxiv.
Beyene AG, McFarlane IR, Pinals RL, Landry MP.  2017.  Stochastic simulation of dopamine neuromodulation for implementation of fluorescent neurochemical probes in the striatal extracellular space.. ACS Chemical Neuroscience. 8(10):2275-2289.
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.  2017.  Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.
Wang S, Tang NHeok, Lara-Gonzalez P, Zhao Z, Cheerambathur DK, Prevo B, Chisholm AD, Desai A, Oegema K.  2017.  A toolkit for GFP-mediated tissue-specific protein degradation in C. elegans. Development. 144:2694-2701.