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2012
Brody T, Yavatkar AS, Kuzin A, Kundu M, Tyson LJ, Ross J, Lin T-Y, Lee C-H, Awasaki T, Lee T et al..  2012.  Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers.. Developmental Dynamics: An Official Publication of the American Association of Anatomists. 241:169-89.
2013
Yu H-H, Awasaki T, Schroeder MDavid, Long F, Yang JS, He Y, Ding P, Kao J-C, Wu GYueh-Yi, Peng H et al..  2013.  Clonal development and organization of the adult Drosophila central brain.. Current biology : CB. 23:633-43.
Yang JS, Awasaki T, Yu H-H, He Y, Ding P, Kao J-C, Lee T.  2013.  Diverse neuronal lineages make stereotyped contributions to the Drosophila locomotor control center, the central complex.. The Journal of Comparative Neurology. 521(12):2645-62,Spc1.
Lin S, Marin EC, Yang C-P, Kao C-F, Apenteng BA, Huang Y, O’Connor MB, Truman JW, Lee T.  2013.  Extremes of lineage plasticity in the Drosophila brain.. Current Biology. 23(19):1908-13.
2014
Wang Y-C, Yang JS, Johnston R, Ren Q, Lee Y-J, Luan H, Brody T, Odenwald WF, Lee T.  2014.  Drosophila intermediate neural progenitors produce lineage-dependent related series of diverse neurons.. Development. 141:253-8.
Lee T.  2014.  Generating mosaics for lineage analysis in flies.. Wiley Interdisciplinary Reviews - Developmental Biology. 3(1):69-81.
Awasaki T, Kao C-F, Lee Y-J, Yang C-P, Huang Y, Pfeiffer BD, Luan H, Jing X, Huang Y-F, He Y et al..  2014.  Making Drosophila lineage-restricted drivers via patterned recombination in neuroblasts.. Nature Neuroscience. 17(4):631-7.
Port F, Chen H-M, Lee T, Bullock SL.  2014.  Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 111(29):E2967-76.
Lin AC, Bygrave AM, de Calignon A, Lee T, Miesenböck G.  2014.  Sparse, decorrelated odor coding in the mushroom body enhances learned odor discrimination.. Nature Neuroscience. 17(4):559-68.
2015
Chen H-M, Huang Y, Pfeiffer BD, Yao X, Lee T.  2015.  An enhanced gene targeting toolkit for Drosophila: golic+.. Genetics. 199(3):683-94.
Liu Z, Yang C-P, Sugino K, Fu C-C, Liu L-Y, Yao X, Lee LP, Lee T.  2015.  Opposing intrinsic temporal gradients guide neural stem cell production of varied neuronal fates.. Science (New York, N.Y.). 350(6258):317-20.
2016
Ren Q, Awasaki T, Huang Y-F, Liu Z, Lee T.  2016.  Cell class-lineage analysis reveals sexually dimorphic lineage compositions in the Drosophila brain.. Current Biology : CB. 26(19):2583-93.
Yang C-P, Fu C-C, Sugino K, Liu Z, Ren Q, Liu L-Y, Yao X, Lee LP, Lee T.  2016.  Transcriptomes of lineage-specific Drosophila neuroblasts profiled by genetic targeting and robotic sorting.. Development (Cambridge, England). 143(3):411-21.
2017
Shao L, Saver M, Chung P, Ren Q, Lee T, Kent CF, Heberlein U.  2017.  Dissection of the Drosophila neuropeptide F circuit using a high-throughput two-choice assay.. Proceedings of the National Academy of Sciences of the United States of America. 114(38):e8091-9.
Yang C-P, Samuels TJ, Huang Y, Yang L, Ish-Horowicz D, Davis I, Lee T.  2017.  Imp and Syp RNA-binding proteins govern decommissioning of Drosophila neural stem cells.. Development (Cambridge, England). 144(19):3454-64.
Ren Q, Yang C-P, Liu Z, Sugino K, Mok K, He Y, Ito M, Nern A, Otsuna H, Lee T.  2017.  Stem cell-intrinsic, seven-up-triggered temporal factor gradients diversify intermediate neural progenitors.. Current Biology : CB. 27(9):1303-13.
Lee T.  2017.  Wiring the Drosophila brain with individually tailored neural lineages.. Current Biology : CB. 27(2):R77-R82.
2018
Ren Q, Awasaki T, Wang Y-C, Huang Y-F, Lee T.  2018.  Lineage-guided Notch-dependent gliogenesis by multi-potent progenitors.. Development (Cambridge, England).
Miyares RLinda, Lee T.  2018.  Temporal control of Drosophila central nervous system development.. Current Opinion in Neurobiology. 56:24-32.
2019
Garcia-Marques J, Yang C-P, Espinosa Medina I, Koyama M, Lee T.  2019.  CLADES: a programmable sequence of reporters for lineage analysis. bioRxiv.
Espinosa Medina I, Garcia-Marques J, Cepko C, Lee T.  2019.  High-throughput dense reconstruction of cell lineages.. Open Biology. 9(12):190229.
Liu L-Y, Long X, Yang C-P, Miyares RL, Sugino K, Singer RH, Lee T.  2019.  Mamo decodes hierarchical temporal gradients into terminal neuronal fate.. Elife. 8
Lacin H, Chen H-M, Long X, Singer RH, Lee T, Truman JW.  2019.  Neurotransmitter identity is acquired in a lineage-restricted manner in the Drosophila CNS.. Elife. 8
Sugino K, Garcia-Marques J, Espinosa-Medina I, Lee T.  2019.  Theoretical modeling on CRISPR-coded cell lineages: efficient encoding and optimal reconstruction. bioRxiv.
Garcia-Marques J, Yang C-P, Espinosa Medina I, Mok K, Koyama M, Lee T.  2019.  Unlimited genetic switches for cell-type-specific manipulation.. Neuron. 104(2):227-38.