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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Fly Facility
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
F
Funke J, Andres B, Hamprecht F, Cardona A, Cook M.
2012. Efficient automatic 3D-reconstruction of branching neurons from EM data.. Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on.
Funke J, Zhang C, Pietzsch T, Ballester MAGonzalez, Saalfeld S.
2017. The candidate multi-cut for cell segmentation.. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.
2017. TED: A Tolerant Edit Distance for segmentation evaluation.. Methods. 115:119-27.
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.
2016. Structured learning of assignment models for neuron reconstruction to minimize topological errors.. IEEE 13th International Symposium on Biomedical Imaging (ISBI). :607-11.
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.
2019. Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.