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2017
Eichler K, Li F, Litwin-Kumar A, Park Y, Andrade I, Schneider-Mizell CM, Saumweber T, Huser A, Eschbach C, Gerber B et al..  2017.  The complete connectome of a learning and memory centre in an insect brain.. Nature. 548(7666):175-182.
Gerhard S, Andrade I, Fetter RD, Cardona A, Schneider-Mizell CM.  2017.  Conserved neural circuit structure across Drosophila larva development revealed by comparative connectomics.. eLife. 6:e29089.
Takagi S, Cocanougher BThomas, Niki S, Miyamoto D, Kohsaka H, Kazama H, Fetter RDoty, Truman JWilliam, Zlatic M, Cardona A et al..  2017.  Divergent connectivity of homologous command-like neurons mediates segment-specific touch responses in Drosophila.. Neuron. 96(6):1373-87.
Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK et al..  2017.  Multicut brings automated neurite segmentation closer to human performance.. Nature Methods. 14(2):101-102.
Larderet I, Fritsch PMJ, Gendre N, G Neagu-Maier L, Fetter RD, Schneider-Mizell CM, Truman JW, Zlatic M, Cardona A, Sprecher SG.  2017.  Organization of the drosophila larval visual circuit.. eLife. :e28387.
Priebe CE, Park Y, Tang M, Athreya A, Lyzinski V, Vogelstein JT, Qin Y, Cocanougher B, Eichler K, Zlatic M et al..  2017.  Semiparametric spectral modeling of the Drosophila connectome.. arXiv. :1705.03297.
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.  2017.  TED: A Tolerant Edit Distance for segmentation evaluation.. Methods. 115:119-27.
Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, H Seung S.  2017.  Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.. Bioinformatics (Oxford, England). 33(15):2424-6.
2016
MacNamee SE, Liu KE, Gerhard S, Tran CT, Fetter RD, Cardona A, Tolbert LP, Oland LA.  2016.  Astrocytic glutamate transport regulates a Drosophila CNS synapse that lacks astrocyte ensheathment.. The Journal of Comparative Neurology. 524(10):1979-98.
Fushiki A, Zwart MF, Kohsaka H, Fetter RD, Cardona A, Nose A.  2016.  A circuit mechanism for the propagation of waves of muscle contraction in Drosophila.. eLife. 5
Jovanic T, Schneider-Mizell CM, Shao M, Masson J-B, Denisov G, Fetter RD, Mensh BD, Truman JW, Cardona A, Zlatic M.  2016.  Competitive disinhibition mediates behavioral choice and sequences in Drosophila.. Cell. 167(3):858-70.
Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart M, Champion A, Midgley F, Fetter RD, Saalfeld S et al..  2016.  Quantitative neuroanatomy for connectomics in Drosophila.. eLife. :e12059.
Zwart MF, Pulver SR, Truman JW, Fushiki A, Cardona A, Landgraf M.  2016.  Selective inhibition mediates the sequential recruitment of motor pools.. Neuron. 91(3):615-28.
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.  2016.  Structured learning of assignment models for neuron reconstruction to minimize topological errors.. IEEE 13th International Symposium on Biomedical Imaging (ISBI). :607-11.
Schlegel P, Texada MJ, Miroschnikow A, Schoofs A, Hückesfeld S, Peters M, Schneider-Mizell CM, Lacin H, Li F, Fetter RD et al..  2016.  Synaptic transmission parallels neuromodulation in a central food-intake circuit.. eLife.
Berck ME, Khandelwal A, Claus L, Hernandez-Nunez L, Si G, Tabone CJ, Li F, Truman JW, Fetter RD, Louis M et al..  2016.  The wiring diagram of a glomerular olfactory system.. eLife. 5
2015
Heckscher ES, Zarin AArzan, Faumont S, Clark MQ, Manning L, Fushiki A, Schneider-Mizell CM, Fetter RD, Truman JW, Zwart MF et al..  2015.  Even-Skipped(+) interneurons are core components of a sensorimotor circuit that maintains left-right symmetric muscle contraction amplitude.. Neuron. 88(2):314-29.
Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JValdes, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW et al..  2015.  A multilevel multimodal circuit enhances action selection in Drosophila.. Nature. 520(7549):633-9.
Klein M, Afonso B, Vonner AJ, Hernandez-Nunez L, Berck M, Tabone CJ, Kane EA, Pieribone VA, Nitabach MN, Cardona A et al..  2015.  Sensory determinants of behavioral dynamics in Drosophila thermotaxis.. Proceedings of the National Academy of Sciences of the United States of America. 112(2):E220-9.
Kreshuk A, Funke J, Cardona A, Hamprecht FA.  2015.  Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain.. Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015. :661-8.
2014
Parslow A, Cardona A, Bryson-Richardson RJ.  2014.  Sample drift correction following 4D confocal time-lapse imaging.. Journal of Visualized Experiments: JoVE. (86)
2012
Cardona A, Tomancak P.  2012.  Current challenges in open-source bioimage informatics.. Nature Methods. 9(7):661-5.
Funke J, Andres B, Hamprecht F, Cardona A, Cook M.  2012.  Efficient automatic 3D-reconstruction of branching neurons from EM data.. Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on.
Saalfeld S, Fetter RD, Cardona A, Tomancak P..  2012.  Elastic volume reconstruction from series of ultra-thin microscopy sections.. Nature Methods. 9(7):717-20.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B et al..  2012.  Fiji: an open-source platform for biological-image analysis.. Nature Methods. 9(7):676-82.