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3 Publications

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    04/18/24 | Connectome-driven neural inventory of a complete visual system
    Aljoscha Nern , Frank Loesche , Shin-ya Takemura , Laura E Burnett , Marisa Dreher , Eyal Gruntman , Judith Hoeller , Gary B Huang , Michal Januszewski , Nathan C Klapoetke , Sanna Koskela , Kit D Longden , Zhiyuan Lu , Stephan Preibisch , Wei Qiu , Edward M Rogers , Pavithraa Seenivasan , Arthur Zhao , John Bogovic , Brandon S Canino , Jody Clements , Michael Cook , Samantha Finley-May , Miriam A Flynn , Imran Hameed , Kenneth J Hayworth , Gary Patrick Hopkins , Philip M Hubbard , William T Katz , Julie Kovalyak , Shirley A Lauchie , Meghan Leonard , Alanna Lohff , Charli A Maldonado , Caroline Mooney , Nneoma Okeoma , Donald J Olbris , Christopher Ordish , Tyler Paterson , Emily M Phillips , Tobias Pietzsch , Jennifer Rivas Salinas , Patricia K Rivlin , Ashley L Scott , Louis A Scuderi , Satoko Takemura , Iris Talebi , Alexander Thomson , Eric T Trautman , Lowell Umayam , Claire Walsh , John J Walsh , C Shan Xu , Emily A Yakal , Tansy Yang , Ting Zhao , Jan Funke , Reed George , Harald F Hess , Gregory S X E Jefferis , Christopher Knecht , Wyatt Korff , Stephen M Plaza , Sandro Romani , Stephan Saalfeld , Louis K Scheffer , Stuart Berg , Gerald M Rubin , Michael B Reiser
    bioRxiv. 2024 Apr 18:. doi: 10.1101/2024.04.16.589741

    Vision provides animals with detailed information about their surroundings, conveying diverse features such as color, form, and movement across the visual scene. Computing these parallel spatial features requires a large and diverse network of neurons, such that in animals as distant as flies and humans, visual regions comprise half the brain’s volume. These visual brain regions often reveal remarkable structure-function relationships, with neurons organized along spatial maps with shapes that directly relate to their roles in visual processing. To unravel the stunning diversity of a complex visual system, a careful mapping of the neural architecture matched to tools for targeted exploration of that circuitry is essential. Here, we report a new connectome of the right optic lobe from a male Drosophila central nervous system FIB-SEM volume and a comprehensive inventory of the fly’s visual neurons. We developed a computational framework to quantify the anatomy of visual neurons, establishing a basis for interpreting how their shapes relate to spatial vision. By integrating this analysis with connectivity information, neurotransmitter identity, and expert curation, we classified the 53,000 neurons into 727 types, about half of which are systematically described and named for the first time. Finally, we share an extensive collection of split-GAL4 lines matched to our neuron type catalog. Together, this comprehensive set of tools and data unlock new possibilities for systematic investigations of vision in Drosophila, a foundation for a deeper understanding of sensory processing.

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    03/15/24 | Social state gates vision using three circuit mechanisms in Drosophila
    Catherine E. Schretter , Tom Hindmarsh Sten , Nathan Klapoetke , Mei Shao , Aljoscha Nern , Marisa Dreher , Daniel Bushey , Alice A. Robie , Adam L. Taylor , Kristin M. Branson , Adriane Otopalik , Vanessa Ruta , Gerald M. Rubin
    bioRxiv. 2024 Mar 15:. doi: 10.1101/2024.03.15.585289

    Animals are often bombarded with visual information and must prioritize specific visual features based on their current needs. The neuronal circuits that detect and relay visual features have been well-studied. Yet, much less is known about how an animal adjusts its visual attention as its goals or environmental conditions change. During social behaviors, flies need to focus on nearby flies. Here, we study how the flow of visual information is altered when female Drosophila enter an aggressive state. From the connectome, we identified three state-dependent circuit motifs poised to selectively amplify the response of an aggressive female to fly-sized visual objects: convergence of excitatory inputs from neurons conveying select visual features and internal state; dendritic disinhibition of select visual feature detectors; and a switch that toggles between two visual feature detectors. Using cell-type-specific genetic tools, together with behavioral and neurophysiological analyses, we show that each of these circuit motifs function during female aggression. We reveal that features of this same switch operate in males during courtship pursuit, suggesting that disparate social behaviors may share circuit mechanisms. Our work provides a compelling example of using the connectome to infer circuit mechanisms that underlie dynamic processing of sensory signals.Competing Interest StatementThe authors have declared no competing interest.

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    01/25/24 | New genetic tools for mushroom body output neurons in Drosophila
    Rubin GM, Aso Y
    eLife. 2024 Jan 24:. doi: 10.7554/eLife.90523

    How memories of past events influence behavior is a key question in neuroscience. The major associative learning center in Drosophila, the Mushroom Body (MB), communicates to the rest of the brain through Mushroom Body Output Neurons (MBONs). While 21 MBON cell types have their dendrites confined to small compartments of the MB lobes, analysis of EM connectomes revealed the presence of an additional 14 MBON cell types that are atypical in having dendritic input both within the MB lobes and in adjacent brain regions. Genetic reagents for manipulating atypical MBONs and experimental data on their functions has been lacking. In this report we describe new cell-type-specific GAL4 drivers for many MBONs, including the majority of atypical MBONs. Using these genetic reagents, we conducted optogenetic activation screening to examine their ability to drive behaviors and learning. These reagents provide important new tools for the study of complex behaviors in Drosophila.

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