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Main Menu - Block
Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Fly Facility
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
janelia7_blocks-janelia7_node_tool_type_list | block
Software
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Fiji Cell Counter
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About the Innovation
A structured process for the manual count of particles (e.g., cell bodies) in 2D and 3D images of any kind with a graphical mark-up in the image. For flexibility reasons, this tool was implemented as a macro-set for fiji/ImageJ (version 1.47h).
For installation:
- Download and decompress the file behind the download link below,
- Copy the result into the 'macros' folder of your fiji/ImageJ,
- Restart fiji/imageJ,
- Install tool into fiji/imageJ from the menu: Plugins>Macros>Install...
Successful installation will generate two new buttons ('RGB' and '?') in fiji/imageJ.
The '?' button will display more help on the function of the tool.
Related Links:
By clicking on the links on the right of the page, to download the software, you agree to the terms of the Janelia Open-Source Software License linked here.
For inquiries, please reference:
Janelia 2013-039
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Link Acknowledgement
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