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5 Results

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    Tools
    Optical Flow for Time-lapse Microscopy Using Super-Voxels
    Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and is...
    Tools
    Reconstruction of Cell Lineages from Large-Scale Fluorescence Microscopy Data
    The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
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    SiMView
    The short optical penetration depth of light  microscopes limits live imaging of large biological specimens. Improvements in live imaging, specifically the ability to record and quantify fast...
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    Whole-brain Functional Recordings
    Brain function relies on communication between large populations of neurons across multiple brain areas, a full understanding of which would require knowledge of the time-varying activity of all...
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    Whole-embryo Mechanics Modeling
    We provide the following computer code and programs: Matlab classes and utility functions for calculating spherical harmonics basis functions and their derivatives, and also for generating...