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11 Results

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    Tools
    A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility...
    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Efficient processing and analysis of large-scale light-sheet microscopy data Light-sheet microscopy is a powerful method for imaging the development and...
    Tools
    Fast and robust optical flow for time-lapse microscopy using super-voxels
    Fast and robust optical flow for time-lapse microscopy using super-voxels Optical flow is a key method used for quantitative motion estimation of biological...
    Tools
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data The comprehensive reconstruction of cell lineages in complex...
    Tools
    High-throughput multiview image registration for SiMView microscopy
    High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of...
    Tools
    Image processing and analysis of whole-brain functional recordings
    Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across...
    Tools
    Reconstruction of Cell Lineages from Large-Scale Fluorescence Microscopy Data
    The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
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    SiMView
    The short optical penetration depth of light  microscopes limits live imaging of large biological specimens. Improvements in live imaging, specifically the ability to record and quantify fast...
    Tools
    Whole-animal functional and developmental imaging with isotropic spatial resolution
    Whole-animal functional and developmental imaging with isotropic spatial resolution Imaging fast cellular dynamics across large specimens requires high...
    Tools
    Whole-brain Functional Recordings
    Brain function relies on communication between large populations of neurons across multiple brain areas, a full understanding of which would require knowledge of the time-varying activity of all...