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35 Results

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    Tools
    A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility...
    Tools
    BuildEM
    BuildEM is a modular CMake-based system that leverages CMake's ExternalProject to simplify and automate a complex build process. Its goal is to allow simple, modular...
    Tools
    Ctrax
    Ctrax was designed to allow high-throughput, quantitative analysis of behavior in freely moving flies. Our primary goal in this project is to provide quantitative behavior analysis tools to the...
    Tools
    DataPro Electrophysiology Data Acquisition Software for Instrutech A-to-D Hardware
    DataPro DataPro is a program for electrophysiology data acquisition using Instrutech A-to-D hardware, primarily geared towards trial-based...
    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Efficient processing and analysis of large-scale light-sheet microscopy data Light-sheet microscopy is a powerful method for imaging the development and...
    Tools
    Ephus
    Ephus is a collection of small programs which work together harmoniously to support electrophysiology, LSPS, and other applications. For an overview, see Suter, O'Connor, et al., ...
    Tools
    Fast and robust optical flow for time-lapse microscopy using super-voxels
    Fast and robust optical flow for time-lapse microscopy using super-voxels Optical flow is a key method used for quantitative motion estimation of biological...
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    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data The comprehensive reconstruction of cell lineages in complex...
    Tools
    Fiji Cell Counter
    Structured process for the manual count of particles (e.g. cell bodies) in 2D and 3D images of any kind with graphical mark-up in the image. For flexibility reasons this tool was implemented as...
    Tools
    FlyFizz: Tools to Study Drosophila Brain Physiology
    About FlyFizz FlyFizz is an evolving webspace dedicated to enabling the exchange of information relating to one growing subfield of Drosophila brain physiology: understanding how neural circuits...