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35 ResultsShowing 1-10 of 35 results
A spherical harmonics framework for whole-embryo mechanics modeling
A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility...
BuildEM is a modular CMake-based system that leverages CMake's ExternalProject to simplify and automate a complex build process. Its goal is to allow simple, modular...
Ctrax was designed to allow high-throughput, quantitative analysis of behavior in freely moving flies. Our primary goal in this project is to provide quantitative behavior analysis tools to the...
DataPro Electrophysiology Data Acquisition Software for Instrutech A-to-D Hardware
DataPro DataPro is a program for electrophysiology data acquisition using Instrutech A-to-D hardware, primarily geared towards trial-based...
Efficient processing and analysis of large-scale light-sheet microscopy data
Efficient processing and analysis of large-scale light-sheet microscopy data Light-sheet microscopy is a powerful method for imaging the development and...
Ephus is a collection of small programs which work together harmoniously to support electrophysiology, LSPS, and other applications. For an overview, see Suter, O'Connor, et al., ...
Fast and robust optical flow for time-lapse microscopy using super-voxels
Fast and robust optical flow for time-lapse microscopy using super-voxels Optical flow is a key method used for quantitative motion estimation of biological...
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data The comprehensive reconstruction of cell lineages in complex...
Fiji Cell Counter
Structured process for the manual count of particles (e.g. cell bodies) in 2D and 3D images of any kind with graphical mark-up in the image. For flexibility reasons this tool was implemented as...
FlyFizz: Tools to Study Drosophila Brain Physiology
About FlyFizz FlyFizz is an evolving webspace dedicated to enabling the exchange of information relating to one growing subfield of Drosophila brain physiology: understanding how neural circuits...