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20 Results

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    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Light-sheet microscopy is a powerful method for imaging the development and function of complex biological systems at high spatiotemporal resolution and over long time scales. Such experiments...
    Tools
    Fiji Cell Counter
    A structured process for the manual count of particles (e.g., cell bodies) in 2D and 3D images of any kind with a graphical mark-up in the image. For flexibility reasons, this tool was implemented...
    Tools
    FlyFizz: Tools to Study Drosophila Brain Physiology
    FlyFizz is an evolving webspace dedicated to enabling the exchange of information relating to one growing subfield of Drosophila brain physiology: understanding how neural circuits generate...
    Tools
    GALA
    Powerful Software Tools for Nanometer-Resolution EM Neuro-image Large Stacks' Segmentation Image segmentation, a fundamental problem in computer vision, concerns the division of...
    Tools
    High-throughput multiview image registration for SiMView microscopy
    High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
    Tools
    Image processing and analysis of whole-brain functional recordings
    Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
    Tools
    Lattice Light Deconvolution Software - cudaDeconv
    Software Description This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light-sheet microscope developed by Eric Betzig's group at HHMI'...
    Tools
    Modular Visual Display System
    About the Innovation This project documents the hardware and software of an updated version of the Panels, a modular display system typically used for insect vision research. This is an...
    Tools
    OSS - A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
    Tools
    OSS - Fast and robust optical flow for time-lapse microscopy using super-voxels
    Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and...