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34 Results

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    Tools
    A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
    Tools
    BuildEM
    A Modular CMake-based System BuildEM is a modular CMake-based system that leverages CMake's ExternalProject to simplify and automate a complex build process. Its goal is to allow ...
    Tools
    Ctrax
    An open-source, freely available, machine vision program Ctrax was designed to allow high-throughput, quantitative analysis of behavior in freely moving flies. Our primary goal in this...
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    DataPro Electrophysiology Data Acquisition Software for Instrutech A-to-D Hardware
    DataPro DataPro is a program for electrophysiology data acquisition using Instrutech A-to-D hardware, primarily geared towards trial-based acquisition.  It allows easy configuration...
    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Efficient processing and analysis of large-scale light-sheet microscopy data Configure Light-sheet microscopy is a powerful method for imaging the development and function of complex...
    Tools
    Ephus
    About the Innovation Ephus is a collection of small programs which work together harmoniously to support electrophysiology, LSPS, and other applications. For an overview, see Suter, O'...
    Tools
    Fast and robust optical flow for time-lapse microscopy using super-voxels
    Fast and robust optical flow for time-lapse microscopy using super-voxels Configure Optical flow is a key method used for...
    Tools
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data The comprehensive reconstruction of cell lineages in complex multicellular organisms is a...
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    Fiji Cell Counter
    About the Innovation Structured process for the manual count of particles (e.g. cell bodies) in 2D and 3D images of any kind with graphical mark-up in the image. For flexibility reasons...
    Tools
    FlyFizz: Tools to Study Drosophila Brain Physiology
    About FlyFizz FlyFizz is an evolving webspace dedicated to enabling the exchange of information relating to one growing subfield of Drosophila brain physiology: understanding how neural circuits...