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13 ResultsShowing 1-10 of 13 results
Efficient processing and analysis of large-scale light-sheet microscopy data
Light-sheet microscopy is a powerful method for imaging the development and function of complex biological systems at high spatiotemporal resolution and over long time scales. Such experiments...
Powerful Software Tools for Nanometer-Resolution EM Neuro-image Large Stacks' Segmentation Image segmentation, a fundamental problem in computer vision, concerns the division of...
High-throughput multiview image registration for SiMView microscopy
High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
Image processing and analysis of whole-brain functional recordings
Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
Lattice Light Deconvolution Software - cudaDeconv
Software Description This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light-sheet microscope developed by Eric Betzig's group at HHMI'...
OSS - A spherical harmonics framework for whole-embryo mechanics modeling
A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
OSS - Fast and robust optical flow for time-lapse microscopy using super-voxels
Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and...
OSS - Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
Serial Section Alignment
Serial Section Alignment Configure Briefly, serial section tomography entails slicing a block of tissue into...
ShuTu Open-Source Software for Neuron Reconstruction
ShuTu Configure ShuTu (Chinese for “dendrite”) is a software platform for semi-automated reconstruction of neuronal morphology. It is designed for neurons stained following patch-...