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16 Results

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    Tools
    A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
    Tools
    Ctrax
    An open-source, freely available, machine vision program Ctrax was designed to allow high-throughput, quantitative analysis of behavior in freely moving flies. Our primary goal in this...
    Tools
    DataPro Electrophysiology Data Acquisition Software for Instrutech A-to-D Hardware
    DataPro DataPro is a program for electrophysiology data acquisition using Instrutech A-to-D hardware, primarily geared towards trial-based acquisition.  It allows easy configuration...
    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Light-sheet microscopy is a powerful method for imaging the development and function of complex biological systems at high spatiotemporal resolution and over long time scales. Such experiments...
    Tools
    Fast and robust optical flow for time-lapse microscopy using super-voxels
    Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and...
    Tools
    Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
    Tools
    GALA
    Powerful Software Tools for Nanometer-Resolution EM Neuro-image Large Stacks' Segmentation Image segmentation, a fundamental problem in computer vision, concerns the division of...
    Tools
    High-throughput multiview image registration for SiMView microscopy
    High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
    Tools
    Image processing and analysis of whole-brain functional recordings
    Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
    Tools
    Lattice Light Deconvolution Software - cudaDeconv
    Software Description This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light-sheet microscope developed by Eric Betzig's group at HHMI'...