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13 Results

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    Tools
    Efficient processing and analysis of large-scale light-sheet microscopy data
    Light-sheet microscopy is a powerful method for imaging the development and function of complex biological systems at high spatiotemporal resolution and over long time scales. Such experiments...
    Tools
    GALA
    Powerful Software Tools for Nanometer-Resolution EM Neuro-image Large Stacks' Segmentation Image segmentation, a fundamental problem in computer vision, concerns the division of...
    Tools
    High-throughput multiview image registration for SiMView microscopy
    High-throughput multiview image registration for SiMView microscopy This archive contains our custom software tools for registration and fusion of simultaneous multi-view (SiMView)...
    Tools
    Image processing and analysis of whole-brain functional recordings
    Image processing and analysis of whole-brain functional recordings Brain function relies on communication between large populations of neurons across multiple brain areas, a full...
    Tools
    Lattice Light Deconvolution Software - cudaDeconv
    Software Description This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light-sheet microscope developed by Eric Betzig's group at HHMI'...
    Tools
    OSS - A spherical harmonics framework for whole-embryo mechanics modeling
    A spherical harmonics framework for whole-embryo mechanics modeling We provide the following computer code and programs: Matlab classes and utility functions for calculating...
    Tools
    OSS - Fast and robust optical flow for time-lapse microscopy using super-voxels
    Optical flow is a key method used for quantitative motion estimation of biological structures in light microscopy. It has also been used as a key module in segmentation and tracking systems and...
    Tools
    OSS - Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
    The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for the...
    Tools
    Serial Section Alignment
    Serial Section Alignment Configure Briefly, serial section tomography entails slicing a block of tissue into...
    Tools
    ShuTu Open-Source Software for Neuron Reconstruction
    ShuTu Configure ShuTu (Chinese for “dendrite”) is a software platform for semi-automated reconstruction of neuronal morphology. It is designed for neurons stained following patch-...