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2025
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O'Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2025.  Large-scale high-density brain-wide neural recording in nonhuman primates.. Nat Neurosci.
Sun W, Winnubst J, Natrajan M, Lai C, Kajikawa K, Michaelos M, Gattoni R, Stringer C, Flickinger D, Fitzgerald JE et al..  2025.  Learning produces an orthogonalized state machine in the hippocampus.. Nature. 640
Chiossi HSC, Nardin M, Tkačik G, Csicsvari JL.  2025.  Learning reshapes the hippocampal representation hierarchy. Proc. Natl. Acad. Sci. U.S.A..
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..  2025.  Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
Zhang Q, Dang W, Wang MC.  2025.  Lysosomes Signal through Epigenome to Regulate Longevity across Generations. bioRxiv.
Zhang Q, Dang W, Wang MC.  2025.  Lysosomes Signal through Epigenome to Regulate Longevity across Generations. bioRxiv.
2024
Laurent F, Blanc A, May L, Gándara L, Cocanougher BT, Jones BMW, Hague P, Barre C, Vestergaard CL, Crocker J et al..  2024.  LarvaTagger: Manual and automatic tagging of drosophila larval behaviour.. Bioinformatics.
Vanderleest TE, Xie Y, Budhathoki R, Linvill K, Hobson C, Heddleston J, Loerke D, J Blankenship T.  2024.  Lattice light sheet microscopy reveals 4D force propagation dynamics and leading-edge behaviors in an embryonic epithelium in Drosophila.. Curr Biol.
Safa ATehrani, Biswas T, Ramakrishnan A, Bhandawat V.  2024.  Leg compliance is required to explain the ground reaction force patterns and speed ranges in different gaits. bioRxiv.
Tan HL, Yin L, Tan Y, Ivanov J, Plucinska K, Ilanges A, Herb BR, Wang P, Kosse C, Cohen P et al..  2024.  Leptin Activated Hypothalamic BNC2 Neurons Acutely Suppress Food Intake. bioRxiv.
van der Meer W, van Steen ACI, Mahlandt E, Rolas L, Wang H, Arts J, Kempers L, Grönloh M, Schoon RM, Driessen A et al..  2024.  Leukocytes use endothelial membrane tunnels to extravasate the vasculature. bioRxiv.
Shroff H, Testa I, Jug F, Manley S.  2024.  Live-cell imaging powered by computation.. Nature Reviews Molecular Cell Biology.
Miyoshi T, Vishwasrao HD, Belyantseva IA, Sajeevadathan M, Ishibashi Y, Adadey SM, Harada N, Shroff H, Friedman TB.  2024.  Live-cell single-molecule fluorescence microscopy for protruding organelles reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of inner ear hair cells. bioRxiv.
2023
Nasu Y, Aggarwal A, Le GNT, Vo CTrang, Kambe Y, Wang X, Beinlich FRM, Lee ABomin, Ram TR, Wang F et al..  2023.  Lactate biosensors for spectrally and spatially multiplexed fluorescence imaging.. Nature Communications. 14(1):6598.
Trautmann EM, Hesse JK, Stine GM, Xia R, Zhu S, O’Shea DJ, Karsh B, Colonell J, Lanfranchi FF, Vyas S et al..  2023.  Large-scale brain-wide neural recording in nonhuman primates. bioRxiv.
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2023.  A leaky integrate-and-fire computational model based on the connectome of the entire adult Drosophila brain reveals insights into sensorimotor processing. bioRxiv.
Nguyen C, Lei H-T, Lai LTung Faat, Gallenito MJ, Mu X, Matthies D, Gonen T.  2023.  Lipid flipping in the omega-3 fatty-acid transporter.. Nature Communications. 14(1):2571.
Sheridan A, Nguyen TM, Deb D, Lee W-CAllen, Saalfeld S, Turaga SC, Manor U, Funke J.  2023.  Local shape descriptors for neuron segmentation.. Nature Methods. 20(2):295-303.
Hinterer F, Schneider MC, Hubmer S, López-Martínez M, Ramlau R, Schütz GJ.  2023.  Localization of fixed dipoles at high precision by accounting for sample drift during illumination. Applied Physics Letters. 123(2)
Lai C, Kim D, Lustig B, Tanaka S, Barbarits B, Narayan L, Colonell J, Paulsen O, Lee AK, Harris TD.  2023.  Low-latency extracellular spike assignment for high-density electrodes at single-neuron resolution. bioRxiv.
Choi H, Liao Y-C, Yoon YJ, Grimm J, Lavis LD, Singer RH, Lippincott-Schwartz J.  2023.  Lysosomal release of amino acids at ER three-way junctions regulates transmembrane and secretory protein mRNA translation.. bioRxiv.
2022
Jacobs DS, Allen MC, Park J, Moghaddam B.  2022.  Learning of probabilistic punishment as a model of anxiety produces changes in action but not punisher encoding in the dmPFC and VTA.. eLife. 11
Darshan R, Rivkind A.  2022.  Learning to represent continuous variables in heterogeneous neural networks. Cell Reports. 39(1):110612.
Zhu X, Hager ER, Huyan C, Sgro AE.  2022.  Leveraging the model-experiment loop: Examples from cellular slime mold chemotaxis.. Exp Cell Res. 418(1):113218.
Preusser F, Neuschulz A, Junker JPhilipp, Rajewsky N, Preibisch S.  2022.  Long-term imaging reveals behavioral plasticity during C. elegans dauer exit. BMC Biology. 20(1):277.