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2009
Watkins RW, Lavis LD, Kung VM, Los GV, Raines RT.  2009.  Fluorogenic affinity label for the facile, rapid imaging of proteins in live cells.. Organic & Biomolecular Chemistry. 7(19):3969-75.
Satou C, Kimura Y, Kohashi T, Horikawa K, Takeda H, Oda Y, Higashijima S-ichi.  2009.  Functional Role of a Specialized Class of Spinal Commissural Inhibitory Neurons during Fast Escapes in Zebrafish. Journal of Neuroscience. 29:6780–6793.
Satou C, Kimura Y, Kohashi T, Horikawa K, Takeda H, Oda Y, Higashijima S-ichi.  2009.  Functional Role of a Specialized Class of Spinal Commissural Inhibitory Neurons during Fast Escapes in Zebrafish. Journal of Neuroscience. 29:6780–6793.
Levin ED, Aschner M, Heberlein U, Ruden D, Welsh-Bohmer KA, Bartlett S, Berger K, Chen L, Corl AB, Eddins D et al..  2009.  Genetic aspects of behavioral neurotoxicology.. Neurotoxicology. 30(5):741-53.
Nawrocki EP, Kolbe DL, Eddy SR.  2009.  Infernal 1.0: inference of RNA alignments.. Bioinformatics. 25:1335-7.
Shtengel G, Galbraith JA, Galbraith CG, Lippincott-Schwartz J, Gillette JM, Manley S, Sougrat R, Waterman CM, Kanchanawong P, Davidson MW et al..  2009.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.. Proceedings of the National Academy of Sciences of the United States of America. 106:3125-30.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Kolbe DL, Eddy SR.  2009.  Local RNA structure alignment with incomplete sequence.. Bioinformatics. 25(10):1236-43.
Kainmueller D, Lamecker H, Seim H, Zachow S.  2009.  Multi-object segmentation of head bones.. MIDAS Journal.
Kainmueller D, Lamecker H, Zachow S.  2009.  Multi-object segmentation with coupled deformable models.. Annals of the British Machine Vision Association. 2009(5):1-10.
Carmine-Simmen K, Proctor T, Tschäpe J, Poeck B, Triphan T, Strauss R, Kretzschmar D.  2009.  Neurotoxic effects induced by the Drosophila amyloid-beta peptide suggest a conserved toxic function.. Neurobiology of Disease. 33(2):274-81.
Huston SJ, Krapp HG.  2009.  Nonlinear integration of visual and haltere inputs in fly neck motor neurons.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 29(42):13097-105.
Erezyilmaz DF, Kelstrup HC, Riddiford LM.  2009.  The nuclear receptor E75A has a novel pair-rule-like function in patterning the milkweed bug, Oncopeltus fasciatus.. Developmental Biology. 334(1):300-10.
Joseph RM, Devineni AV, King IFG, Heberlein U.  2009.  Oviposition preference for and positional avoidance of acetic acid provide a model for competing behavioral drives in Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 106(27):11352-7.
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M.  2009.  Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.. Proceedings of the National Academy of Sciences of the United States of America. 106(33):13897-902.
Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ et al..  2009.  A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.. PLoS Computational Biology. 5(3):e1000334.
Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ et al..  2009.  A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.. PLoS Computational Biology. 5(3):e1000334.
Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ et al..  2009.  A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.. PLoS Computational Biology. 5(3):e1000334.
Zito K, Scheuss V, Knott G, Hill T, Svoboda K.  2009.  Rapid functional maturation of nascent dendritic spines.. Neuron. 61(2):247-58.
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR et al..  2009.  Rfam: updates to the RNA families database.. Nucleic Acids Research. 37(Database issue):D136-40.
Menon V, Spruston N, Kath WL.  2009.  A state-mutating genetic algorithm to design ion-channel models.. Proceedings of the National Academy of Sciences of the United States of America. 106(39):16829-34.
Zhong H, Sia G-M, Sato TR, Gray NW, Mao T, Khuchua Z, Huganir RL, Svoboda K.  2009.  Subcellular dynamics of type II PKA in neurons.. Neuron. 62:363-74.
Kner P, Chhun BB, Griffis ER, Winoto L, Gustafsson MGL.  2009.  Super-resolution video microscopy of live cells by structured illumination.. Nature Methods. 6(5):339-42.
Katz Y, Menon V, Nicholson DA, Geinisman Y, Kath WL, Spruston N.  2009.  Synapse distribution suggests a two-stage model of dendritic integration in CA1 pyramidal neurons.. Neuron. 63(2):171-7.