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2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..  2025.  Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Squires JR, Sun Y, Hoffmann AD, Zhang Y, Minor AC, Singh A, Scholten D, Ding H, Mao C, Platanias LC et al..  2025.  Abstract B049: Deep Learning Enables Identification of Cell Types and Clusters (iCTC) in Immune Tumor Ecosystems for Prognostic Assessment in Cancer. Clinical Cancer Research. 31:B049-B049.
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating Neuron Reconstruction with PATHFINDER. bioRxiv.
Yu Z, Gutu A, Kim N, O’Shea EK.  2025.  Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Schretter CE.  2025.  Aggression across sexes from a contextual- and circuit-based perspective.. Curr Opin Neurobiol. 93:103071.
Liu H, Squires J, Sun Y, Hoffmann ADaniel, Zhang Y, Platanias LC, Gradishar WJohn, Cristofanilli M, Stringer C.  2025.  Analysis of deep learning for automated recognition of immune cells interacting with CTCs for prognostic assessment in cancer.. Journal of Clinical Oncology. 43:e13028-e13028.
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A Fluorogenic Dye Library for Expanding the Capability of Protein-Adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.
2024
Shiozaki HM, Wang K, Lillvis JL, Xu M, Dickson BJ, Stern DL.  2024.  Activity of nested neural circuits drives different courtship songs in Drosophila.. Nat Neurosci.
Rodríguez C, Pan D, Natan RG, Mohr MA, Miao M, Chen X, Northen TR, Vogel JP, Ji N.  2024.  Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues. bioRxiv.
Gao SMax, Qi Y, Zhang Q, Guan Y, Lee Y-T, Ding L, Wang L, Mohammed AS, Li H, Fu Y et al..  2024.  Aging atlas reveals cell-type-specific effects of pro-longevity strategies.. Nat Aging.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Kraitzick AZ, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ et al..  2024.  All-optical reporting of inhibitory receptor driving force in the nervous system. Nat Commun. 15(1):8913.
Updegrove TB, Delerue T, Anantharaman V., Cho H, Chan C, Nipper T, Choo-Wosoba H, Jenkins L, Zhang L, Su Y et al..  2024.  Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity. Sci Adv. 10(42):eadq0791.
Bao L, Fu L, Su Y, Chen Z, Peng Z, Sun L, Gonzalez FJ, Wu C, Zhang H, Shi B et al..  2024.  Amino acid transporter SLC7A5 regulates cell proliferation and secretary cell differentiation and distribution in the mouse intestine. Int J Biol Sci. 20(6):2187-2201.
Stringer C, Pachitariu M.  2024.  Analysis methods for large-scale neuronal recordings.. Science. 386(6722):eadp7429.
Breimann L, Bahry E, Zouinkhi M, Kolyvanov K, Street LAnnika, Preibisch S, Ercan S.  2024.  Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos. bioRxiv.
Breimann L, Bahry E, Zouinkhi M, Kolyvanov K, Street LAnnika, Preibisch S, Ercan S.  2024.  Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos. bioRxiv.
Man B, Kim E, Vadlakonda A, Stern DL, Crown N.  2024.  Analysis of meiotic recombination in Drosophila simulans shows heterozygous inversions do not cause an interchromosomal effect. Genetics.
Li B, Sun Q, Ding F, Xu Q, Kang N, Xue Y, Ladron-de-Guevara A, Hirase H, Weikop P, Gong S et al..  2024.  Anti-seizure effects of norepinephrine-induced free fatty acid release.. Cell Metab.
Barrero DJ, Wijeratne SS, Zhao X, Cunningham GF, Yan R, Nelson CR, Arimura Y, Funabiki H, Asbury CL, Yu Z et al..  2024.  Architecture and flexibility of native kinetochores revealed by structural studies utilizing a thermophilic yeast. Curr Biol. S0960-9822(24):00939-4.
Miura Y, Kim J-il, Jurjut O, Kelley KW, Yang X, Chen X, Thete MVijay, Revah O, Cui B, Pachitariu M et al..  2024.  Assembloid model to study loop circuits of the human nervous system. bioRxiv.
Athreya A, Xie L, Tjian R, Zhang B, Liu ZJ.  2024.  Assessing the impact of Brd2 depletion on chromatin compartmentalization. bioRxiv.
Ahrens MB, Khakh BS, Poskanzer KE.  2024.  Astrocyte Calcium Signaling. Cold Spring Harb Perspect Biol.
2023
Proskurin M, Manakov M, Karpova AY.  2023.  ACC neural ensemble dynamics are structured by strategy prevalence. eLife.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ, Raimondo JV.  2023.  All-optical reporting of chloride ion driving force in the nervous system. bioRxiv.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ, Raimondo JV.  2023.  All-optical reporting of inhibitory receptor driving force in the nervous system.. bioRxiv.