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Author Title [ Type(Desc)] Year
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Book Chapter
Bilen J, Bonini NM.  2005.  Drosophila and C. elegans models of human age-associated neurodegeneratiove diseases.. Protein Misfolding, Aggregation and Conformational Diseases.
Conference Paper
Scheffer LK.  2012.  Design tools for artificial nervous systems.. Design Automation Conference (DAC), 2012 49th ACM/EDAC/IEEE.
Kwak IS, Guo J-Z, Hantman A, Branson K, Kriegman D.  2020.  Detecting the Starting Frame of Actions in Video. 2020 IEEE Winter Conference on Applications of Computer Vision (WACV).
Zabalax FA, Card GM, Fontaine EI, Murray RM, Dickinson MH.  2009.  Dynamics of escaping flight initiations of Drosophila melanogaster.. 2nd IEEE RAS & EMBS International Conference on Biomedical Robotics and Biomechatronics.
Conference Proceedings
Patterson GH, Betzig E, Lippincott-Schwartz J, Hess HF.  2007.  Developing photo activated localization microscopy. 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.
Journal Article
Tjian R.  2007.  Daniel E. Koshland, Jr. 1920-2007.. Cell. 130:579-80.
Zeldin OB, Brewster AS, Hattne J, Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Zhao M, Weis WI, Sauter NK, Brunger AT.  2015.  Data Exploration Toolkit for serial diffraction experiments.. Acta Crystallographica Section D: Biological Crystallography. 71(Pt 2):352-6.
Meyer PA, Socias S, Key J, Ransey E, Tjon EC, Buschiazzo A, Lei M, Botka C, Withrow J, Neau D et al..  2016.  Data publication with the structural biology data grid supports live analysis.. Nature Communications. 7:10882.
Zhou J, Peng H, Suen CY.  2008.  Data-driven decomposition for multi-class classification.. Pattern Recognition. 41:67-76.
Hocine S, Singer RH.  2011.  A date with telomerase: pick you up at S phase.. Molecular Cell. 44(5):685-6.
Boyken SE, Benhaim MA, Busch F, Jia M, Back MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A et al..  2019.  De novo design of tunable, pH-driven conformational changes.. Science. 364(6441):658-64.
Willy NM, Ferguson JP, Akatay A, Huber S, Djakbarova U, Silahli S, Cakez C, Hasan F, Chang HC, Travesset A et al..  2021.  De novo endocytic clathrin coats develop curvature at early stages of their formation.. Development Cell. 56(22):3146-3159.e5.
Chen Z, Shiozaki M, Haas KM, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD et al..  2023.  De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography. Cell. 186(23):5041-5053.e19.
Huang R, Xu Y, Wan W, Shou X, Qian J, You Z, Liu B, Chang C, Zhou T, Lippincott-Schwartz J et al..  2015.  Deacetylation of nuclear LC3 drives autophagy initiation under starvation.. Molecular cell. 57(3):456-66.
Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS.  2004.  Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis.. Cell. 117(4):527-39.
Henriques R, Leterrier C, Weigel A.  2023.  Decoding life's inner workings: advances in quantitative bioimaging.. Open Biology. 13(11):230329.
Shields BC, Kahuno E, Kim C, Apostolides PF, Brown J, Lindo S, Mensh BD, Dudman JT, Lavis LD, Tadross MR.  2017.  Deconstructing behavioral neuropharmacology with cellular specificity.. Science (New York, N.Y.). 356(6333)
Atasoy D, J Betley N, Su HH, Sternson SM.  2012.  Deconstruction of a neural circuit for hunger.. Nature. 488(7410):172-7.
Ellis EE, Adkins CT, Galovska NM, Lavis LD, R Johnson J.  2013.  Decoupled roles for the atypical, bifurcated binding pocket of the ybfF hydrolase.. Chembiochem : A European Journal of Chemical Biology. 14(9):1134-44.
Leonardo A, Konishi M.  1999.  Decrystallization of adult birdsong by perturbation of auditory feedback.. Nature. 399(6735):466-70.
Humberg T-H, Bruegger P, Afonso B, Zlatic M, Truman JW, Gershow M, Samuel A, Sprecher SG.  2018.  Dedicated photoreceptor pathways in Drosophila larvae mediate navigation by processing either spatial or temporal cues.. Nature Communications. 9(1):1260.
Branson K.  2018.  A deep (learning) dive into a cell.. Nature Methods. 15(4):253-4.
Speiser A, Müller L-R, Matti U, Obara CJ, Legant WR, Kreshuk A, Macke JH, Ries J, Turaga SC.  2021.  Deep learning enables fast and dense single-molecule localization with high accuracy. Nature Methods. 18(9)
Heinrich L, Bogovic JA, Saalfeld S.  2017.  Deep learning for isotropic super-resolution from non-isotropic 3D electron microscopy.. International Conference on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2017. MICCAI 2017. Lecture Notes in Computer Science. 10434:arXiv:1706.03142.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2024.  Deep-Tissue Spatial Omics: Imaging Whole-Embryo Transcriptomics and Subcellular Structures at High Spatial Resolution. bioRxiv.