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- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
Submitted
In Press
Gonen T, Waksman G..
In Press. Recent progress in membrane protein structures and investigation methods.. Current Opinion in Structural Biology. 22(4):467-8.
2025
Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al..
2025. Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.
Yu Z, Gutu A, Kim N, O’Shea EK.
2025. Activity-dependent synapse elimination requires caspase-3 activation. eLife.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.
2025. A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.. Nano Lett.
Desissaire S, Ziemczonok M, Cantat-Moltrecht T, Kuś A, Godefroy G, Hervé L, Paviolo C, Krauze W, Allier C, Mandula O et al..
2025. Bio-inspired 3D-printed phantom: Encoding cellular heterogeneity for characterization of quantitative phase imaging. Measurement. 247:116765.
Galbraith CG, English BP, Boehm U, Galbraith J.
2025. BPS2025 - Local cytoplasmic tradewinds direct soluble proteins to their targets. Biophysical Journal. 124(3):375a-376a.
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.
2025. Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Stringer C, Pachitariu M.
2025. Cellpose3: one-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Rariden M, Stringer C.
2025. Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.
Aaron JS, Jacobs CA, Malacrida L, Keppler A, French P, Fletcher DA, Wood C, Brown CM, Wright GD, Ogawa S et al..
2025. Challenges of microscopy technology dissemination to resource-constrained communities.. Nat Methods.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..
2025. Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.
2025. Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Pjanovic V, Zavatone-Veth JA, Masset P, Keemink SW, Nardin M.
2025. Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..
2025. Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..
2025. Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Erginkaya M, Cruz T, Brotas M, Steck K, Nern A, Torrão F, Varela N, Bock D, Reiser M, M Chiappe E.
2025. A competitive disinhibitory network for robust optic flow processing in Drosophila. Nat Neurosci..
Park J, Polidoro P, Fortunato C, Arnold J, Mensh B, Gallego JA, Dudman JT.
2025. Conjoint specification of action by neocortex and striatum. Neuron.
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.
2025. Cortical control of innate behavior from subcortical demonstration. bioRxiv.
Lollar MJ, Kim E, Stern DL, Pool JE.
2025. Courtship song differs between African and European populations of Drosophila melanogaster and involves a strong effect locus. G3 Genes|Genomes|Genetics.
Pachitariu M, Zhong L, Gracias A, Minisi A, Lopez C, Stringer C.
2025. A critical initialization for biological neural networks. bioRxiv.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.
2025. Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..
2025. Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.
2025. DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..
2025. Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.