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2022
Plaza SM, Clements J, Dolafi T, Umayam L, Neubarth NN, Scheffer LK, Berg S.  2022.  neuPrint: An open access tool for EM connectomics.. Frontiers in Neuroinformatics. 16:896292.
Shinomiya K, Nern A, Meinertzhagen IA, Plaza SM, Reiser MB.  2022.  Neuronal circuits integrating visual motion information in Drosophila melanogaster.. Current Biology. 32(16):3529-3544.
2021
Schlegel P, Bates AShakeel, Stürner T, Jagannathan SR, Drummond N, Hsu J, Capdevila LSerratosa, Javier A, Marin EC, Barth-Maron A et al..  2021.  Information flow, cell types and stereotypy in a full olfactory connectome.. eLife. 10
2020
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
2019
Shinomiya K, Huang G, Lu Z, Parag T, C Xu S, Aniceto R, Ansari N, Cheatham N, Lauchie S, Neace E et al..  2019.  Comparisons between the ON- and OFF-edge motion pathways in the brain.. eLife. 8
Katz WT, Plaza SM.  2019.  DVID: Distributed versioned image-oriented dataservice.. Frontiers in Neural Circuits. 13(5)
Shinomiya K, Horne JAnne, McLin S, Wiederman M, Nern A, Plaza SM, Meinertzhagen IA.  2019.  The organization of the second optic chiasm of the optic lobe.. Frontiers in Neural Circuits. 13:65.
2018
Plaza SM, Funke J.  2018.  Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
Zhao T, Olbris DJ, Yu Y, Plaza SM.  2018.  NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction.. Frontiers in Neural Circuits. 12:101.
Horne JAnne, Langille C, McLin S, Wiederman M, Lu Z, C Xu S, Plaza SM, Scheffer LK, Hess HF, Meinertzhagen IA.  2018.  A resource for the antennal lobe provided by the connectome of glomerulus VA1v.. eLife. 7
2017
Takemura S-ya, Aso Y, Hige T, Wong AM, Lu Z, C Xu S, Rivlin PK, Hess HF, Zhao T, Parag T et al..  2017.  A connectome of a learning and memory center in the adult Drosophila brain.. eLife. 6:e26975.
Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK et al..  2017.  Multicut brings automated neurite segmentation closer to human performance.. Nature Methods. 14(2):101-102.
2016
Plaza SM, Berg SE.  2016.  Large-scale electron microscopy image segmentation in spark.. arXiv. :arXiv:1604.00385.
2015
Shinomiya K, Takemura S-ya, Rivlin PK, Plaza SM, Scheffer LK, Meinertzhagen IA.  2015.  A common evolutionary origin for the ON- and OFF-edge motion detection pathways of the Drosophila visual system.. Frontiers in Neural Circuits. 9:33.
Plaza SM, Markov IL.  2015.  Solving the third-shift problem in ic piracy with test-aware logic locking.. IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 34(6):961-71.
2014
Plaza SM, Parag T, Huang G, Olbris DJ, Saunders MA, Rivlin PK.  2014.  Annotating synapses in large EM datasets.. arXiv. :arXiv:1409.1801[q-bio.QM].
Plaza SM, Zhao T.  2014.  Automatic neuron type identification by neurite localization in the Drosophila medulla.. arXiv. :arXiv:1409.1892[q-bio.NC].
Parag T, Chakraborty A, Plaza SM.  2014.  A context-aware delayed agglomeration framework for EM segmentation.. arXiv. :arXiv:1406.1476[cs.CV].
Plaza SM.  2014.  Focused proofreading: efficiently extracting connectomes from segmented EM images.. arXiv. :arXiv:1409.1199[q-bio.QM].
Nunez-Iglesias J, Kennedy R, Plaza SM, Chakraborty A, Katz WT.  2014.  Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages. Frontiers in Neuroinformatics. 8:34.
Huang G, Plaza SM.  2014.  Identifying synapses using deep and wide multiscale recursive networks.. arXiv. :arXiv:1409.1789[cs.CV].
Plaza SM, Markov IL.  2014.  Protecting integrated circuits from piracy with test-aware logic locking.. ICCAD '14 Proceedings of the 2014 IEEE/ACM International Conference on Computer-Aided Design. :262-269.
Parag T, Plaza SM, Scheffer LK.  2014.  Small sample learning of superpixel classifiers for EM segmentation- extended version.. arXiv. :arXiv:1406.1774[cs.CV].
Plaza SM, Scheffer LK, Chklovskii DB.  2014.  Toward large-scale connectome reconstructions.. Current Opinion in Neurobiology. 25C:201-10.
2013
Takemura S-ya, Bharioke A, Lu Z, Nern A, Vitaladevuni, iv S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P et al..  2013.  A visual motion detection circuit suggested by Drosophila connectomics.. Nature. 500(7461):175–81.