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Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Fly Facility
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
Book Chapter
Journal Article
Junek S, Chen T-W, Alevra M, Schild D.
2009. Activity correlation imaging: visualizing function and structure of neuronal populations.. Biophysical Journal. 96(9):3801-9.
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..
2019. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Lin B-J, Chen T-W, Schild D.
2007. Cell type-specific relationships between spiking and [Ca2+]i in neurons of the Xenopus tadpole olfactory bulb.. The Journal of Physiology. 582(Pt 1):163-75.
Wei Z, Lin B-J, Chen T-W, Daie K, Svoboda K, Druckmann S.
2020. A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology.. PLoS Computational Biology. 16(9):e1008198.
Peron S, Chen T-W, Svoboda K.
2015. Comprehensive imaging of cortical networks.. Current Opinion in Neurobiology. 32:115-123.
Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W.
2012. A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.. The Journal of Neuroscience. 32:3131-41.
Akerboom J, Calderón NCarreras, Tian L, Wabnig S, Prigge M, Tolö J, Gordus A, Orger MB, Severi KE, Macklin JJ et al..
2013. Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.. Frontiers in Molecular Neuroscience. 6:2.
Chen T-W, Lin B-J, Brunner E, Schild D.
2006. In situ background estimation in quantitative fluorescence imaging.. Biophysical Journal. 90(7):2534-47.
Chen T-W, Li N, Daie K, Svoboda K.
2017. A map of anticipatory activity in mouse motor cortex.. Neuron. 94(4):866-879.e4.
Wang C, Liu R, Milkie DE, Sun W, Tan Z, Kerlin A, Chen T-W, Kim DS, Ji N.
2014. Multiplexed aberration measurement for deep tissue imaging in vivo.. Nature Methods.
Tan Z, Sun W, Chen T-W, Kim D, Ji N.
2015. Neuronal representation of ultraviolet visual stimuli in mouse primary visual cortex.. Scientific Reports. 5:12597.
Wardill TJ, Chen T-W, Schreiter ER, Hasseman JP, Tsegaye G, Fosque BF, Behnam R, Shields BC, Ramirez M, Kimmel BE et al..
2013. A neuron-based screening platform for optimizing genetically-encoded calcium indicators.. PLoS One. 8:e77728.
Chen T-W, Lin B-J, Schild D.
2009. Odor coding by modules of coherent mitral/tufted cells in the vertebrate olfactory bulb.. Proceedings of the National Academy of Sciences of the United States of America. 106(7):2401-6.
Akerboom J, Chen T-W, Wardill TJ, Marvin JS, Mutlu S, Caldero NCarreras, Esposti F, Borghuis BG, Sun XRichard, Gordus A et al..
2012. Optimization of a GCaMP calcium indicator for neural activity imaging.. The Journal of Neuroscience. 32:13819-40.
Marvin JS, Borghuis BG, Tian L, Cichon J, Harnett MT, Akerboom J, Gordus A, Renninger SL, Chen T-W, Bargmann CI et al..
2013. An optimized fluorescent probe for visualizing glutamate neurotransmission.. Nature Methods. 10:162-70.
Thestrup T, Litzlbauer J, Bartholomäus I, Mues M, Russo L, Dana H, Kovalchuk Y, Liang Y, Kalamakis G, Laukat Y et al..
2014. Optimized ratiometric calcium sensors for functional in vivo imaging of neurons and T lymphocytes.. Nature Methods. 11(2):175-82.
Manzini I, Brase C, Chen T-W, Schild D.
2007. Response profiles to amino acid odorants of olfactory glomeruli in larval Xenopus laevis.. The Journal of Physiology. 581(Pt 2):567-79.
Abdelfattah AS, Zheng J, Singh A, Huang Y-C, Reep D, Tsegaye G, Tsang A, Arthur BJ, Rehorova M, Olson CVL et al..
2023. Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Neuron. 111(10):1547-1563.
Dana H, Chen T-W, Hu A, Shields BC, Cui G, Looger L, Kim DS, Svoboda K.
2014. Thy1 - GCaMP6 transgenic mice for neuronal population imaging in vivo.. PLoS One. 9(9):e108697.
Chen T-W, Wardill TJ, Sun Y, Pulvar SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V et al..
2013. Ultrasensitive fluorescent proteins for imaging neuronal activity.. Nature. 499:295-300.