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Book Chapter
Shao L, E Rego H.  2014.  Structured illumination microscopy (Chapter 15.). Fluorescence Microscopy: Super-resolution and other novel techniques. :213–225.
Conference Paper
Jain V, Bollmann B, Richardson M, Berger DR, Helmstaedter MN, Briggman KL, Denk W, Bowden JB, Mendenhall JM, Abraham WC et al..  2010.  Boundary learning by optimization with topological constraints.. IEEE Conference on Computer Vision and Pattern Recognition.
Royer LA, Richmond DL, Rother C, Andres B, Kainmueller D.  2016.  Convexity shape constraints for image segmentation.. IEEE Conference on Computer Vision and Pattern Recognition (CVPR).
Royer LA, Richmond DL, Rother C, Andres B, Kainmueller D.  2016.  Convexity shape constraints for image segmentation.. IEEE Conference on Computer Vision and Pattern Recognition (CVPR).
Royer LA, Richmond DL, Rother C, Andres B, Kainmueller D.  2016.  Convexity shape constraints for image segmentation.. IEEE Conference on Computer Vision and Pattern Recognition (CVPR).
Yeo C, Ahammad P, Ramchandran K, Sastry S.  2008.  High speed action recognition and localization in compressed domain videos.. IEEE Transactions on Circuits and Systems for Video Technology: Special issue on Video Surveillance.
Rodriguez IF, Branson KM, Acuna E, Agosto-Rivera J, Giray T, Megret R.  2018.  Honeybee detection and pose estimation using convolutional neural networks.. RFIAP 2018.
Mi L, Wang H, Meirovitch Y, Schalek R, Turaga SC, Lichtman JW, Samuel ADT, Shavit N.  2020.  Learning Guided Electron Microscopy with Active Acquisition. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020.
Richmond DL, Kainmueller D, Yang MY, Myers EW, Rother C.  2016.  Mapping auto-context decision forests to deep ConvNets for semantic segmentation.. British Machine Vision Conference.
Richmond DL, Kainmueller D, Yang MY, Myers EW, Rother C.  2016.  Mapping auto-context decision forests to deep ConvNets for semantic segmentation.. British Machine Vision Conference.
Singer J, Lienhard M, Seim H, Kainmueller D, Kuss A, Lamecker H, Zachow S, Menzel R, Rybak J.  2008.  Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active statistical shape models.. Neuroinformatics 2008.
Aitchison L, Russell L, Packer AM, Yan J, Castonguay P, Häusser M, Turaga SC.  2017.  Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit. Advances in Neural Information Processing Systems.
Rodriguez IF, Megret R, Egnor R, Branson K, Agosto JL, Giray T, Acuna E.  2018.  Multiple animals tracking in video using part affinity fields. Visual observation and analysis of Vertebrate And Insect Behavior 2018.
Dutta B., Trautmann E.M, Welkenhuysen M., Shenoy K.V, Andrei A., Harris T.D, Lopez C.M, O'Callahan J., Putzeys J., Raducanu B.C et al..  2019.  The Neuropixels probe: A CMOS based integrated microsystems platform for neuroscience and brain-computer interfaces.. 2019 IEEE International Electron Devices Meeting (IEDM).
Stern DL, Simon JC, Dedryver CA, Rispe C, Hullé M.  2004.  Prospects in aphid genetics. Aphids in a new millennium. Proceedings of the Sixth International Symposium on Aphids.
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S..  2007.  Supervised Learning of Image Restoration with Convolutional Networks. IEEE 11th International Conference on Computer Vision, 2007. ICCV 2007.
Conference Proceedings
Preibisch S, Saalfeld S, Rohlfing T, Tomancak P.  2009.  Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.. Medical Imaging 2009: Image Processing. 7259:72592S.
Harmon C, Ahammad P, Hammonds AS, Weiszmann R, Celniker SE, Sastry S, Rubin GM.  2007.  Comparative analysis of spatial patterns of gene expression in Drosophila Melanogaster imaginal discs.. International Conference on Research in Computational Molecular Biology.
Yeo C, Ahammad P, Ramchandran K, Sastry S.  2006.  Compressed domain real-time action recognition.. IEEE International Workshop on Multimedia Signal Processing.
Ahammad P, Harmon C, Hammonds AS, Sastry S, Rubin GM.  2005.  Joint nonparametric alignment for analyzing spatial gene expression patterns of Drosophila imaginal discs.. IEEE Conference on Computer Vision and Pattern Recognition. 2:755-60.
Aitchison L, Russell L, Packer AM, Yan J, Castonguaye P, Häusser M, Turaga SC.  2017.  Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit.. 31st Conference on Neural Information Processing Systems (NIPS 2017).
Yeo C, Ahammad P, Zhang H, Ramchandran K.  2009.  Rate-constrained distributed distance testing and its applications.. IEEE International Conference on Acoustics, Speech and Signal Processing.
Yeo C, Ahammad P, Zhang H, Ramchandran K.  2009.  Rate-constrained distributed distance testing and its applications.. IEEE International Conference on Acoustics, Speech and Signal Processing.
Yeo C, Ahammad P, Ramchandran K.  2008.  A rate-efficient approach for establishing visual correspondences via distributed source coding.. SPIE Visual Communications and Image Processing.
Yeo C, Ahammad P, Ramchandran K.  2008.  Rate-efficient visual correspondences using random projections.. IEEE International Conference on Image Processing.