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2016
Paksa A, Bandemer J, Höckendorf B, Razin N, Tarbashevich K, Minina S, Meyen D, Gov NS, Keller PJ, Raz E.  2016.  Repulsive cues combined with physical barriers and cell–cell adhesion determine progenitor cell positioning during organogenesis. Nature Communications. 7:11288.
Chhetri R, Amat F, Wan Y, Höckendorf B, Lemon WC, Keller PJ.  2016.  Whole-animal imaging with high spatio-temporal resolution.. Proceedings of SPIE. 9720:97200R.
2015
Beerman RW, Matty MA, Au GG, Looger LL, Choudhury KRoy, Keller PJ, Tobin DM.  2015.  Direct in vivo manipulation and imaging of calcium transients in neutrophils identify a critical role for leading-edge calcium flux.. Cell Reports. 13(10):2107-17.
Amat F, Höckendorf B, Wan Y, Lemon WC, McDole K, Keller PJ.  2015.  Efficient processing and analysis of large-scale light-sheet microscopy data.. Nature Protocols. 10(11):1679-96.
Li X, Zhou Z, Keller PJ, Zeng H, Liu T, Peng H.  2015.  Interactive exemplar-based segmentation toolkit for biomedical image analysis.. International Symposium on Biomedical Imaging.
Khairy K, Lemon WC, Amat F, Keller PJ.  2015.  Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.. Methods in Molecular Biology. 1189:79-97.
Ingold E, Berg-Maurer CMVom, Burckhardt CJ, Lehnherr A, Rieder P, Keller PJ, Stelzer EH, Greber UF, Neuhauss SCF, Gesemann M.  2015.  Proper migration and axon outgrowth of zebrafish cranial motoneuron subpopulations require the cell adhesion molecule MDGA2A.. Biology Open. 4(2):146-54.
Kim S-Y, Cho JHun, Murray E, Bakh N, Choi H, Ohn K, Ruelas L, Hubbert A, McCue M, Vassallo SL et al..  2015.  Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.. Proceedings of the National Academy of Sciences of the United States of America. 112(46):E6274-83.
Keller PJ, Ahrens MB.  2015.  Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy.. Neuron. 85(3):462-83.
Chhetri RK, Amat F, Wan Y, Höckendorf B, Lemon WC, Keller PJ.  2015.  Whole-animal functional and developmental imaging with isotropic spatial resolution. Nature Methods. 12(12):1171-8.
Lemon WC, Pulver SR, Höckendorf B, McDole K, Branson KM, Freeman J, Keller PJ.  2015.  Whole-central nervous system functional imaging in larval Drosophila.. Nature Communications. 6:7924.
2014
Lauri A, Brunet T, Handberg-Thorsager M, Fischer AHL, Simakov O, Steinmetz PRH, Tomer R, Keller PJ, Arendt D.  2014.  Development of the annelid axochord: insights into notochord evolution.. Science. 345(6202):1365-8.
Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.  2014.  Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.. Nature Methods. 11(9):951-8.
Vladimirov N, Mu Y, Kawashima T, Bennett DV, Yang C-T, Looger LL, Keller PJ, Freeman J, Ahrens MB.  2014.  Light-sheet functional imaging in fictively behaving zebrafish.. Nature Methods. 11(9):883-4.
Keller PJ, Ahrens MB, Freeman J.  2014.  Light-sheet imaging for systems neuroscience.. Nature Methods. 12(1):27-9.
Ichikawa T, Nakazato K, Keller PJ, Kajiura-Kobayashi H, Stelzer EHK, Mochizuki A, Nonaka S.  2014.  Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools.. Nature Protocols. 9(3):575-85.
Höckendorf B, Lavis LD, Keller PJ.  2014.  Making biology transparent.. Nature Biotechnology. 32(11):1104-5.
Crespo C, Vernieri C, Keller PJ, Garrè M, Bender JR, Wittbrodt J, Pardi R.  2014.  The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes.. Journal of Cell Science. 127(Pt 20):4381-95.
2013
Amat F, Keller PJ.  2013.  3D Haar-like elliptical features for object classification in microscopy.. International Symposium on Biomedical Imaging.
Amat F, Myers EW, Keller PJ.  2013.  Fast and robust optical flow for time-lapse microscopy using super-voxels.. Bioinformatics. 29(3):373-80.
Keller PJ.  2013.  Imaging morphogenesis: technological advances and biological insights.. Science. 340(6137):1234168.
Keller PJ.  2013.  In vivo imaging of zebrafish embryogenesis.. Methods. 62(3):268-78.
Tomer R, Khairy K, Keller PJ.  2013.  Light sheet microscopy in cell biology.. Methods in Molecular Biology. 931:123-37.
Lemon WC, Keller PJ.  2013.  Live imaging of nervous system development and function using light-sheet microscopy.. Molecular Reproduction and Development. 82(7-8):605-18.
Ichikawa T, Nakazato K, Keller PJ, Kajiura-Kobayashi H, Stelzer EHK, Mochizuki A, Nonaka S.  2013.  Live imaging of whole mouse embryos during gastrulation: migration analyses of epiblast and mesodermal cells.. PLoS One. 8(7):e64506.