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Author Title [ Type(Desc)] Year
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Journal Article
Hu X, Zhao T, Yao J, Kuang Y, Yang Y.  2017.  Advances in neural engineering for rehabilitation.. Behavioural Neurology. 2017:9240921.
Xie J, Zhao T, Lee T, Myers E, Peng H.  2011.  Anisotropic path searching for automatic neuron reconstruction.. Medical Image Analysis. 15:680-9.
Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E.  2011.  Automated reconstruction of neuronal morphology based on local geometrical and global structural models.. Neuroinformatics. 9(2-3):247-61.
Xie J, Zhao T, Lee T, Myers E, Peng H.  2010.  Automatic neuron tracing in volumetric microscopy images with anisotropic path searching.. Medical Image Computing and Computer-Assisted Intervention: MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 13:472-9.
Plaza SM, Zhao T.  2014.  Automatic neuron type identification by neurite localization in the Drosophila medulla.. arXiv. :arXiv:1409.1892[q-bio.NC].
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J et al..  2023.  BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.. Nature Methods. 20(6)
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
Takemura S-ya, Aso Y, Hige T, Wong AM, Lu Z, C Xu S, Rivlin PK, Hess HF, Zhao T, Parag T et al..  2017.  A connectome of a learning and memory center in the adult Drosophila brain.. eLife. 6:e26975.
Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC.  2012.  mGRASP enables mapping mammalian synaptic connectivity with light microscopy.. Nature Methods. 9:96-102.
Hu X, Wang Y, Zhao T, Gunduz A.  2014.  Neural coding for effective rehabilitation.. Biomed Research International. 2014:286505.
Hu X, Wang Y, Zhao T, Gunduz A.  2014.  Neural computation for rehabilitation.. Biomed Research International. 2014:603985.
Gong C, Ouyang Z, Zhao W, Wang J, Li K, Zhou P, Zhao T, Zheng N, Gong Z.  2019.  A neuronal pathway that commands deceleration in Drosophila larval light-avoidance.. Neuroscience Bulletin. 35(6)
Zhao T, Olbris DJ, Yu Y, Plaza SM.  2018.  NeuTu: Software for Collaborative, Large-Scale, Segmentation-Based Connectome Reconstruction.. Frontiers in Neural Circuits. 12:101.
Peng H, Long F, Zhao T, Myers E.  2011.  Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions.. Neuroinformatics. 9:103-5.
Zhang H, Liu C, Yu Y, Dai J, Zhao T, Zheng N.  2021.  PyNeval: A Python Toolbox for Evaluating Neuron Reconstruction Performance.. Frontiers in Neuroinformatics. 15:767936.
Lam SChun Benny, Ruan Z, Zhao T, Long F, Jenett A, Simpson J, Myers EW, Peng H.  2010.  Segmentation of center brains and optic lobes in 3D confocal images of adult fruit fly brains.. Methods. 50(2):63-9.
Jin DZ, Zhao T, Hunt DL, Tillage RP, Hsu C-L, Spruston N.  2019.  ShuTu: Open-source software for efficient and accurate reconstruction of dendritic morphology.. Frontiers in Neuroinformatics. 13:68.
Druckmann S, Feng L, Lee B, Yook C, Zhao T, Magee JC, Kim J.  2014.  Structured synaptic connectivity between hippocampal regions.. Neuron. 81:629-40.
Takemura S-ya, C Xu S, Lu Z, Rivlin PK, Parag T, Olbris DJ, Plaza S, Zhao T, Katz WT, Umayam L et al..  2015.  Synaptic circuits and their variations within different columns in the visual system of Drosophila.. Proceedings of the National Academy of Sciences of the United States of America. 112(44):13711-6.
Liu C, Wang D, Zhang H, Wu W, Sun W, Zhao T, Zheng N.  2022.  Using Simulated Training Data of Voxel-Level Generative Models to Improve 3D Neuron Reconstruction.. IEEE Transactions on Medical Imaging. PP
Takemura S-ya, Bharioke A, Lu Z, Nern A, Vitaladevuni, iv S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P et al..  2013.  A visual motion detection circuit suggested by Drosophila connectomics.. Nature. 500(7461):175–81.