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2025
Kolb I, Hasseman JP, Matsumoto A, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G, Zheng J, Patel R et al..  2025.  iGABASnFR2: Improved genetically encoded protein sensors of GABA. bioRxiv.
Chen T-W, Bin Huang X-, Plutkis SE, Holland KL, Lavis LD, Lin B-J.  2025.  Imaging neuronal voltage beyond the scattering limit. Nat Methods.
Zheng Y, Cai R, Wang K, Zhang J, Zhuo Y, Dong H, Zhang Y, Wang Y, Deng F, Ji E et al..  2025.  In vivo multiplex imaging of dynamic neurochemical networks with designed far-red dopamine sensors. Science.
2024
Marvin JS, Kokotos AC, Kumar M, Pulido C, Tkachuk AN, Yao JShuxin, Brown TA, Ryan TA.  2024.  iATPSnFR2: a high dynamic range fluorescent sensor for monitoring intracellular ATP. Proc Natl Acad Sci U S A.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae. bioRxiv.
Yamaguchi N, Otsuna H, Eisenberg-Bord M, Ramakrishnan L.  2024.  An Image Processing Tool for Automated Quantification of Bacterial Burdens in Zebrafish Larvae.. Zebrafish.
Ruan X, Mueller M, Liu G, Görlitz F, Fu T-M, Milkie DE, Lillvis J, Killilea A, Betzig E, Upadhyayula S.  2024.  Image processing tools for petabyte-scale light sheet microscopy data.. Nat. Methods.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Grimm JB, Dilan TL et al..  2024.  Imaging the extracellular matrix in live tissues and organisms with a glycan-binding fluorophore. bioRxiv.
Gmaz JM, Keller JA, Dudman JT, Gallego JA.  2024.  Integrating across behaviors and timescales to understand the neural control of movement.. Current Opinion in Neurobiology. 85:102843.
Hoang N, Sardaripour N, Ramey GD, Schilling K, Liao E, Chen Y, Park JHyun, Bledsoe X, Landman BA, Gamazon ER et al..  2024.  Integration of estimated regional gene expression with neuroimaging and clinical phenotypes at biobank scale.. PLoS Biol. 22(9):e3002782.
Schneider MC, Hinterer F, Jesacher A, Schütz GJ.  2024.  Interactive simulation and visualization of point spread functions in single molecule imaging.. Optics Communications.
Coscia SM, Moore AS, Thompson CP, Tirrito CF, E Ostap M, Holzbaur ELF.  2024.  An interphase actin wave promotes mitochondrial content mixing and organelle homeostasis.. Nat Commun. 15(1):3793.
Xu L, Peng F, Luo Q, Ding Y, Yuan F, Zheng L, He W, Zhang SS, Fu X, Liu J et al..  2024.  IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer.. Cell.
Yang S, Heckmann J, Taha A, Gao S, Steinke S, Hust M, Prüß H, Furukawa H, Geis C, Heckmann M et al..  2024.  It only takes seconds for a human monoclonal autoantibody to inhibit N-methyl-D-aspartate receptors. bioRxiv.
Peale DR, Hess H, Lee P.R, Cardona A, Bock DD, Schneider-Mizell C, Fetter RD, Lee W-P, Robinson CG, Iyer N et al..  2024.  iTome Volumetric Serial Sectioning Apparatus for TEM. bioRxiv.
2023
Yoo J, Dombrovski M, Mirshahidi P, Nern A, LoCascio SA, S. Zipursky L, Kurmangaliyev YZ.  2023.  Identifying determinants of synaptic specificity by integrating connectomes and transcriptomes. bioRxiv.
Balasubramanian H, Hobson CM, Chew T-L, Aaron JS.  2023.  Imagining the future of optical microscopy: everything, everywhere, all at once.. Communications Biology. 6(1):1096.
Chen Z, Greenan GA, Shiozaki M, Liu Y, Skinner WM, Zhao X, Zhao S, Yan R, Yu Z, Lishko PV et al..  2023.  In situ cryo-electron tomography reveals the asymmetric architecture of mammalian sperm axonemes.. Nature Structural & Molecular Biology. 30(3):360-9.
Ahmed M, Rajagopalan AE, Pan Y, Li Y, Williams DL, Pedersen EA, Thakral M, Previero A, Close KC, Christoforou CP et al..  2023.  Input density tunes Kenyon cell sensory responses in the Drosophila mushroom body.. Current Biology.
Ahmed M, Rajagopalan AE, Pan Y, Li Y, Williams DL, Pedersen EA, Thakral M, Previero A, Close KC, Christoforou CP et al..  2023.  Input density tunes Kenyon cell sensory responses in the Drosophila mushroom body.. Current Biology. 33(13):2742-2760.e12.
Gessner S, Martin ZAlexandria, Reiche MA, Santos JA, Dinkele R, Ramudzuli A, Dhar N, de Wet TJ, Anoosheh S, Lang DM et al..  2023.  Investigating the composition and recruitment of the mycobacterial ImuA'-ImuB-DnaE2 mutasome.. eLife. 12
2022
Munshi S, Neupane K, Ileperuma SM, Halma MTJ, Kelly JA, Halpern CF, Dinman JD, Loerch S, Woodside MT.  2022.  Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses.. Viruses. 14(2)
Smith MA-Y, Honegger KS, Turner G, de Bivort B.  2022.  Idiosyncratic learning performance in flies.. Biology Letters. 18(2):20210424.
Zagha E, Erlich JC, Lee S, Lur G, O'Connor DH, Steinmetz NA, Stringer C, Yang H.  2022.  The importance of accounting for movement when relating neuronal activity to sensory and cognitive processes.. Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 42(8):1375-1382.
S Shuster A, Li J, Chon UR, Sinantha-Hu MC, Luginbuhl DJ, Udeshi ND, Carey DKiki, Takeo YH, Xie Q, Xu C et al..  2022.  In situ cell-type-specific cell-surface proteomic profiling in mice.. Neuron.