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2025
Vaxenburg R, Siwanowicz I, Merel J, Robie AA, Morrow C, Novati G, Stefanidi Z, Card GM, Reiser MB, Botvinick MM et al..  2025.  Whole-body simulation of realistic fruit fly locomotion with deep reinforcement learning. Nature.
Chen W, James B, Ruetten VMS, Banala S, Wei Z, Fleishman G, Rubinov M, Fishman MC, Engert F, Lavis LD et al..  2025.  Whole-brain, all-optical interrogation of neuronal dynamics underlying gut interoception in zebrafish. bioRxiv.
Lilao-Garzón J, Corujo-Simon E, Vinyoles M, Fischer SC, Guillén J, Balayo T, Muñoz-Descalzo S.  2025.  Wnt/β-catenin signalling assists cell fate decision making in the early mouse embryo. bioRxiv.
2024
Vaxenburg R, Siwanowicz I, Merel J, Robie AA, Morrow C, Novati G, Stefanidi Z, Both G-J, Card GM, Reiser MB et al..  2024.  Whole-body simulation of realistic fruit fly locomotion with deep reinforcement learning. bioRxiv.
Wang Q, Cardona A, Zlatic M, Vogelstein JT, Priebe CE.  2024.  Why do we have so many excitatory neurons? bioRxiv.
Lin H-T, Siwanowicz I, Leonardo A.  2024.  Wireless recordings from dragonfly target detecting neurons during prey interception flight. bioRxiv.
2022
Reiche MA, Aaron JS, Boehm U, DeSantis MC, Hobson CM, Khuon S, Lee RM, Chew T-L.  2022.  When light meets biology - how the specimen affects quantitative microscopy.. Journal of Cell Science. 135(6)
2021
Lundberg E, Funke J, Uhlmann V, Gerlich D, Walter T, Carpenter A, Coehlo LPedro.  2021.  Which image-based phenotypes are most promising for using AI to understand cellular functions and why? Cell Systems. 12(5):384-387.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, C Xu S et al..  2021.  Whole-cell organelle segmentation in volume electron microscopy.. Nature. 599(7883):141-46.
2020
Coddington LT.  2020.  When does midbrain dopamine activity exert its effects on behavior? Nature Neuroscience. 23(2):154-6.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
Ueda HR, Dodt H-U, Osten P, Economo MN, Chandrashekar J, Keller PJ.  2020.  Whole-brain profiling of cells and circuits in mammals by tissue clearing and light-sheet microscopy.. Neuron. 106(3):369-387.
Coates KE, Calle-Schuler SA, Helmick LM, Knotts VL, Martik BN, Salman F, Warner LT, Valla SV, Bock DD, Dacks AM.  2020.  The wiring logic of an identified serotonergic neuron that spans sensory networks.. Journal of Neuroscience. 40(33):6309-27.
Kim H, Horigome M, Ishikawa Y, Li F, J Lauritzen S, Card G, Bock DD, Kamikouchi A.  2020.  Wiring patterns from auditory sensory neurons to the escape and song-relay pathways in fruit flies.. Journal of Comparative Neurology. 528(12):2068.
2018
Spahn C, Grimm JB, Lavis LD, Lampe M, Heilemann M.  2018.  Whole-cell, 3D and multi-color STED imaging with exchangeable fluorophores.. Nano Letters. 19(1):500-5.
Meinertzhagen IA.  2018.  The world of the identified or digital neuron.. Journal of Neurogenetics. :1-6.
2017
Hige T.  2017.  What can tiny mushrooms in fruit flies tell us about learning and memory? Neuroscience Research. 129:8-16.
Otopalik AG, Sutton AC, Banghart M, Marder E.  2017.  When complex neuronal structures may not matter. eLife. 6:e23508.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Lee D, Lee AK.  2017.  Whole-cell recording in the awake brain.. Cold Spring Harbor Protocols. 2017(4):pdb.top087304.
Lee T.  2017.  Wiring the Drosophila brain with individually tailored neural lineages.. Current Biology : CB. 27(2):R77-R82.
2016
Chhetri R, Amat F, Wan Y, Höckendorf B, Lemon WC, Keller PJ.  2016.  Whole-animal imaging with high spatio-temporal resolution.. Proceedings of SPIE. 9720:97200R.
Berck ME, Khandelwal A, Claus L, Hernandez-Nunez L, Si G, Tabone CJ, Li F, Truman JW, Fetter RD, Louis M et al..  2016.  The wiring diagram of a glomerular olfactory system.. eLife. 5
2015
Sofroniew NJ, Svoboda K.  2015.  Whisking.. Current Biology. 25(4):R137-40.
Kreshuk A, Funke J, Cardona A, Hamprecht FA.  2015.  Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain.. Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015. :661-8.