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Author Title [ Type(Desc)] Year
Conference Paper
Mi L, Wang H, Meirovitch Y, Schalek R, Turaga SC, Lichtman JW, Samuel ADT, Shavit N.  2020.  Learning Guided Electron Microscopy with Active Acquisition. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020.
Verma N, Mahajan D, Sellamanickam S, Nair V.  2012.  Learning hierarchical similarity metrics.. IEEE Conference on Computer Vision and Pattern Recognition.
Pachitariu M, Sahani M.  2012.  Learning visual motion in recurrent neural networks.. Neural Information Processing Systems (NIPS 2012).
Richmond DL, Kainmueller D, Yang MY, Myers EW, Rother C.  2016.  Mapping auto-context decision forests to deep ConvNets for semantic segmentation.. British Machine Vision Conference.
Eckstein N, Buhmann J, Cook M, Funke J.  2020.  Microtubule Tracking in Electron Microscopy Volumes. International Conference on Medical Image Computing and Computer-Assisted Intervention.
Seim H, Kainmueller D, Lamecker H, Bindernagel M, Malinowski J, Zachow S.  2010.  Model-based auto-segmentation of knee bones and cartilage in MRI data.. Medical Image Analysis for the Clinic - A Grand Challenge, MICCAI 2010, the 13th International Conference on Medical Image Computing and Computer Assisted Intervention.
Singer J, Lienhard M, Seim H, Kainmueller D, Kuss A, Lamecker H, Zachow S, Menzel R, Rybak J.  2008.  Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active statistical shape models.. Neuroinformatics 2008.
Aitchison L, Russell L, Packer AM, Yan J, Castonguay P, Häusser M, Turaga SC.  2017.  Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit. Advances in Neural Information Processing Systems.
Rodriguez IF, Megret R, Egnor R, Branson K, Agosto JL, Giray T, Acuna E.  2018.  Multiple animals tracking in video using part affinity fields. Visual observation and analysis of Vertebrate And Insect Behavior 2018.
Babenko B, Verma N, Dollar P, Belongie S.  2011.  Multiple instance learning with manifold bags.. International Conference on Machine Learning.
Takasaki K, Tsyboulski DA, Waters J.  2020.  Multiplexed 3-photon microscopy for functional connectomics of mammalian brains.. Multiphoton Microscopy in the Biomedical Sciences XXMultiphoton Microscopy in the Biomedical Sciences XX.
Koay SAnn, Tank D, Brody C.  2019.  Neural Correlates of Cognition in Primary Visual versus Downstream Posterior Cortices During Evidence Accumulation. APS March Meeting Abstracts.
Hu T, Towfic Z.J., Pehlevan C., Genkin A., Chklovskii D.B..  2013.  A neuron as a signal processing device. 2013 Asilomar Conference on Signals, Systems and Computers.
Dutta B., Trautmann E.M, Welkenhuysen M., Shenoy K.V, Andrei A., Harris T.D, Lopez C.M, O'Callahan J., Putzeys J., Raducanu B.C et al..  2019.  The Neuropixels probe: A CMOS based integrated microsystems platform for neuroscience and brain-computer interfaces.. 2019 IEEE International Electron Devices Meeting (IEDM).
Sharma A, Johnson R, Engert F, Linderman SW.  2018.  Point process latent variable models of larval zebrafish behavior. NeurIPS.
Hanslovsky P, Bogovic J, Saalfeld S.  2015.  Post-acquisition image based compensation for thickness variation in microscopy section series.. IEEE 12th International Symposium on Biomedical Imaging (ISBI).
Stern DL, Simon JC, Dedryver CA, Rispe C, Hullé M.  2004.  Prospects in aphid genetics. Aphids in a new millennium. Proceedings of the Sixth International Symposium on Aphids.
Pachitariu M, Petreska B, Sahani M.  2013.  Recurrent linear models of simultaneously-recorded neural populations.. Neural Information Processing Systems (NIPS 2013).
Bogovic JA, Hanslovsky P, Wong AM, Saalfeld S.  2016.  Robust registration of calcium images by learned contrast synthesis.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
Kainmueller D, Lange T, Lamecker H.  2007.  Shape constrained automatic segmentation of the liver based on a heuristic intensity model.. MICCAI Workshop 3D Segmentation in the Clinic.
Hu T, Chklovskii DB.  2014.  Sparse LMS via online linearized Bregman iteration.. ICASSP 2014 - 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP)2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).
Charles AS, Song A, Koay SAnn, Tank DW, Pillow JW.  2017.  Stochastic filtering of two-photon imaging using reweighted ℓ1. 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).
Parag T, Elgammal A.  2011.  Supervised hypergraph labeling.. IEEE Conference on Computer Vision Pattern Recognition.
Jain V., Murray J.F., Roth F., Turaga S., Zhigulin V., Briggman K.L., Helmstaedter M.N., Denk W., Seung H.S..  2007.  Supervised Learning of Image Restoration with Convolutional Networks. IEEE 11th International Conference on Computer Vision, 2007. ICCV 2007.
Jug F, Pietzsch T, Kainmueller D, Myers EW.  2014.  Tracking by assignment facilitates data curation.. Medical Image Computing and Computer-Assisted Intervention – MICCAI Workshop 2014.