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Shao L, Isaac B, Uzawa S, Agard DA, Sedat JW, Gustafsson MGL.  2008.  I5S: wide-field light microscopy with 100-nm-scale resolution in three dimensions.. Biophysical Journal. 94(12):4971-83.
Shao L, Kner P, E Rego H, Gustafsson MGL.  2011.  Super-resolution 3D microscopy of live whole cells using structured illumination.. Nature Methods. 8:1044-6.
Sharma A, Johnson R, Engert F, Linderman SW.  2018.  Point process latent variable models of larval zebrafish behavior. NeurIPS.
Shcherbakova DM, Sengupta P, Lippincott-Schwartz J, Verkhusha VV.  2014.  Photocontrollable fluorescent proteins for superresolution imaging.. Annual review of biophysics. 43:303-29.
Sheban D, Shani T, Maor R, Aguilera-Castrejon A, Mor N, Oldak B, Shmueli MD, Eisenberg-Lerner A, Bayerl J, Hebert J et al..  2022.  SUMOylation of linker histone H1 drives chromatin condensation and restriction of embryonic cell fate identity. Molecular Cell. 82:106-122.e9.
Sheffield MEJ, Best TK, Mensh BD, Kath WL, Spruston N.  2011.  Slow integration leads to persistent action potential firing in distal axons of coupled interneurons.. Nature Neuroscience. 14(2):200-7.
Sheffield MEJ, Edgerton GB, Heuermann RJ, Deemyad T, Mensh BD, Spruston N.  2013.  Mechanisms of retroaxonal barrage firing in hippocampal interneurons.. The Journal of Physiology. 591(Pt 19):4793-805.
Shefi O, Harel A, Chklovskii DB, Ben-Jacob E, Ayali A.  2004.  Biophysical constraints on neuronal branching.. Neurocomputing. 58-60:487-95.
Shekhar S, Zhu L, Mazutis L, Sgro AE, Fai TG, Podolski M.  2014.  Quantitative biology: where modern biology meets physical sciences.. Mol Biol Cell. 25(22):3482-5.
Shekhar K, Menon V.  2019.  Identification of cell types from single-cell transcriptomic data.. Methods in Molecular Biology. 1935:45-77.
Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OTunc, Gritton HJ, Romano MF, Gao R, Yu C-CJay, Tseng H-A et al..  2020.  Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.. Neuron. 107(3):470.
Shen Y, Dana H, Abdelfattah AS, Patel R, Shea J, Molina RS, Rawal B, Rancic V, Chang Y-F, Wu L et al..  2018.  A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.. BMC Biology. 16(1):9.
Shen K, Huang RK, Brignole EJ, Condon KJ, Valenstein ML, Chantranupong L, Bomaliyamu A, Choe A, Hong C, Yu Z et al..  2018.  Architecture of the human GATOR1 and GATOR1-Rag GTPases complexes.. Nature. 556(7699):64-9.
Shen J, Liu X, Yu W-M, Liu J, Nibbelink MGroot, Guo C, Finkel T, Qu C-K.  2011.  A critical role of mitochondrial phosphatase Ptpmt1 in embryogenesis reveals a mitochondrial metabolic stress-induced differentiation checkpoint in embryonic stem cells.. Molecular and Cellular Biology. 31:4902-16.
Shen Y, Wen Y, Sposini S, Vishwanath AAmrapali, Abdelfattah AS, Schreiter ER, M Lemieux J, de Juan-Sanz J, Perrais D, Campbell RE.  2023.  Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin.. ACS Sensors. 8(8):3014-3022.
Shen K, Rogala KB, Chou H-T, Huang RK, Yu Z, Sabatini DM.  2019.  Cryo-EM structure of the human FLCN-FNIP2-Rag-Ragulator complex.. Cell. 179(6):1319-29.
Shepherd D, Harris R, Williams D, Truman JW.  2016.  Postembryonic lineages of the Drosophila ventral nervous system: Neuroglian expression reveals the adult hemilineage associated fiber tracts in the adult thoracic neuromeres.. The Journal of Comparative Neurology. 524(13):2677-95.
Shepherd D, Sahota V, Court R, Williams DW, Truman JW.  2019.  Developmental organization of central neurons in the adult Drosophila ventral nervous system.. Journal of Comparative Neurology. 527(15):2573-2598.
Shepherd GMG, Stepanyants A, Bureau I, Chklovskii D, Svoboda K.  2005.  Geometric and functional organization of cortical circuits.. Nature Neuroscience. 8(6):782-90.
Sheridan A, Nguyen TM, Deb D, Lee W-CAllen, Saalfeld S, Turaga SC, Manor U, Funke J.  2023.  Local shape descriptors for neuron segmentation.. Nature Methods. 20(2):295-303.
Sheridan A, Nguyen T, Deb D, Lee W-CAllen, Saalfeld S, Turaga S, Manor U, Funke J.  2021.  Local Shape Descriptors for Neuron Segmentation. bioRxiv.
Sherman E, Barr V, Manley S, Patterson G, Balagopalan L, Akpan I, Regan CK, Merrill RK, Sommers CL, Lippincott-Schwartz J et al..  2011.  Functional nanoscale organization of signaling molecules downstream of the T cell antigen receptor.. Immunity. 35(5):705-20.
Sheu S-H, Upadhyayula S, Dupuy V, Pang S, Lemire AL, Walpita D, H. Pasolli A, Deng F, Wan J, Wang L et al..  2022.  A serotonergic axon-cilium synapse drives nuclear signaling to maintain chromatin accessibility. Cell. 185(18):3390-3407.
Shi L, Lee T.  2012.  Molecular diversity of Dscam and self-recognition.. Advances in Experimental Medicine and Biology. 739:262-75.
Shi L, Yu H-H, Yang JS, Lee T.  2007.  Specific Drosophila Dscam juxtamembrane variants control dendritic elaboration and axonal arborization.. The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 27(25):6723-8.