Main Menu (Mobile)- Block

Main Menu - Block

Biblio

Export 49 results:
Author [ Title(Desc)] Type Year
Filters: Author is Saalfeld, Stephan  [Clear All Filters]
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
I
Preibisch S, Pietzsch T, Myers E, Tomancak P, Saalfeld S.  2012.  Introduction to ImgLib2. Proceedings of the ImageJ User and Developer Conference.
J
Khairy K, Denisov G, Saalfeld S.  2018.  Joint deformable registration of large EM image volumes: a matrix solver approach.. arXiv.
L
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.  2019.  Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
Sheridan A, Nguyen T, Deb D, Lee W-CAllen, Saalfeld S, Turaga S, Manor U, Funke J.  2021.  Local Shape Descriptors for Neuron Segmentation. bioRxiv.
Sheridan A, Nguyen TM, Deb D, Lee W-CAllen, Saalfeld S, Turaga SC, Manor U, Funke J.  2023.  Local shape descriptors for neuron segmentation.. Nature Methods. 20(2):295-303.
P
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.
Hanslovsky P, Bogovic JA, Saalfeld S.  2015.  Post-acquisition image based compensation for thickness variation in microscopy section series.. IEEE International Symposium on Biomedical Imaging. :507-11.
Hanslovsky P, Bogovic J, Saalfeld S.  2015.  Post-acquisition image based compensation for thickness variation in microscopy section series.. IEEE 12th International Symposium on Biomedical Imaging (ISBI).
Blasse C, Saalfeld S, Etournay R, Sagner A, Eaton S, Myers EW.  2017.  PreMosa: Extracting 2D surfaces from 3D microscopy mosaics.. Bioinformatics (Oxford, England). 33(16):2563-9.
Q
Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart M, Champion A, Midgley F, Fetter RD, Saalfeld S et al..  2016.  Quantitative neuroanatomy for connectomics in Drosophila.. eLife. :e12059.
R
Bogovic JA, Hanslovsky P, Wong AM, Saalfeld S.  2016.  Robust registration of calcium images by learned contrast synthesis.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
S
Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan JA et al..  2022.  A scalable and modular automated pipeline for stitching of large electron microscopy datasets.. eLife. 11
Preibisch S, Saalfeld S, Schindelin J, Tomancak P.  2010.  Software for bead-based registration of selective plane illumination microscopy data.. Nature Methods. 7(6):418-9.
Heinrich L, Funke J, Pape C, Nunez-Iglesias J, Saalfeld S.  2018.  Synaptic cleft segmentation in non-isotropic volume electron microscopy of the complete Drosophila brain.. Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. :317-25.
Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P.  2015.  Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.. Elife. 4
T
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S et al..  2023.  Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.. Microscopy and Microanalysis. 29(Supplement_1):975.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7:e38011.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
Zhu P-P, Hung H-F, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, C Xu S, Saalfeld S et al..  2022.  Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons.. Human Molecular Genetics.
Zhu P-P, Hung H-F, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, C Xu S, Saalfeld S et al..  2022.  Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons.. Human Molecular Genetics. 31(16):2779-2795.
U
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner GW, Nern A, Colonell J, Malkesman O, Saalfeld S.  2018.  An unbiased template of the Drosophila brain and ventral nerve cord.. bioRxiv.
Bogovic JA, Otsuna H, Heinrich L, Ito M, Jeter J, Meissner G, Nern A, Colonell J, Malkesman O, Ito K et al..  2020.  An unbiased template of the Drosophila brain and ventral nerve cord.. PLoS One. 15(12):e0236495.
W
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, C Xu S et al..  2021.  Whole-cell organelle segmentation in volume electron microscopy.. Nature. 599(7883):141-46.